CX300486

Overview
NameCX300486
Unique NameCX300486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:982..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 38/112 (33.93%), Postives = 54/112 (48.21%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 336
            KGKL G+A RVP  +          S  T  E +  A + +A+  +K I+   +E +VS DF                + D   K++AWYDNE GY+ R+VDL + V  N K
Sbjct:  223 KGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYVQENSK 334          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNE-------LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            KGKL+G A RVP P+          +K  +  EEVN  FRE+A          LK IL  C++P+VS D                 + D++V + AWYDNEWGYS R+ DL   +A
Sbjct:  224 KGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDI-VGNPHSAIFDAPLTQVIDNLVHIAAWYDNEWGYSCRLRDLVIYLA 338          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL+G ++RVP P           ++    +EV  A+R +A   L G+L   ++PLVS D                  G   +KV+AWYDNEWG+S RV+D   ++A
Sbjct:  225 GKLSGDSIRVPVPVGSIVELNTTVARDVTRDEVLDAYRAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSELTRVDGRH-IKVVAWYDNEWGFSNRVIDTLQLLA 330          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 36/92 (39.13%), Postives = 46/92 (50.00%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 279
            GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE
Sbjct:  213 GKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G++ RVPT +           K    EE+    ++++++ ELKGIL   ++ +VS DF                +  + VK+++WYDNE+GYS+RV DL   +A
Sbjct:  225 GKLTGMSFRVPTSDVSVVDLVCRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 38/112 (33.93%), Postives = 53/112 (47.32%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 336
            KGKL G+A RVP  +          S  T  E V  A + +A   ++ I+   +E +VS DF                + D   K+IAWYDNE GY+ R+VDL + +  N K
Sbjct:  224 KGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAVCEAVKHAASTSMRNIMHYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLIAWYDNEIGYATRIVDLLEYIQGNSK 335          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 306
            K K   I++RVPT N           KK   E++N+  + +++    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  226 KDKFEAISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 36/104 (34.62%), Postives = 48/104 (46.15%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 312
            K K   I++RVPT N            +     VNAA + +AD    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D A
Sbjct:  226 KDKFEAISVRVPTINVTAIDLSVTLDTRVDIATVNAALKAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFANRMLDTA 329          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 34/107 (31.78%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    7 KLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 327
            K   IA+RVPT N          SK    +E+N    ++++  LK IL   + PLVS+DF                   ++VK++ W DNEWG++ R++D +  +AN
Sbjct:  229 KFEAIAVRVPTINVTAMDLSITVSKDVTIQEINDCLLKASETNLKDILGYTEAPLVSIDFNHDPRSCIIDGTQTRVSDGNLVKLLVWCDNEWGFANRLLDTSFYLAN 335          
The following BLAST results are available for this feature:
BLAST of CX300486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
G3P_CHLTR2.925e-1133.93Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_AQUAE2.925e-1137.93Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_STRAU3.820e-1134.58Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P2_DROSU3.820e-1139.13Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_CRYNE4.989e-1133.33Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CHLMU4.989e-1133.93Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
E4PD_SHEFN6.516e-1132.35D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEAM6.516e-1134.62D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSYIN8.510e-1131.78D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010G05SK SaltLeaf1 Citrus clementina cDNA clone C07010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300486 ID=CX300486; Name=CX300486; organism=Citrus clementina; type=EST; length=542bp
AAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTCTC
GGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGG
TGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCTC
TCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGT
ATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATGG
TTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGTT
GTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACTA
AAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATTT
TTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAA
CACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCATTAATCATTATG
CAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAAAAAA
back to top