CX300486

Overview
NameCX300486
Unique NameCX300486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:982..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+A RVPT N           K    E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  225 GKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+A RVPT +           K     E+NAA +E+++ ELKGIL   ++ +VS DFR               +  +  KV++WYDNEWGYS +V ++A ++A
Sbjct:  225 GKLTGMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTP+           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  231 GKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 312
            KG+L+G+++RVPTPN          ++ T  EEVNAA   +A   LKG+L    EP VS DF                M   MV++++WYDNEWG+S R+ D A
Sbjct:  223 KGRLDGVSIRVPTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDFNHDPHSSVFHMDQTKVMEGRMVRILSWYDNEWGFSNRMADTA 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL
Sbjct:  225 GKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDL 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 330
            KGKL+G ALRVP P           SK     E+NA F+++A+  LKGIL   D P+VS D                 +     KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  230 KGKLDGYALRVPIPTGSVTDLTADLSKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIA-SQAKVVSWYDNEWGYSNRLVDLVGLVGKS 338          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  223 GKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  223 GKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  223 GKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 312
            GKL+G ++RVPTPN           + T  EE+N A   +A  +LKGIL   D+P VS+DF                M   +V+V++WYDNEWG+S R+ D A
Sbjct:  226 GKLDGTSIRVPTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTA 328          
The following BLAST results are available for this feature:
BLAST of CX300486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
G3P_PODAN3.944e-1639.25Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_BACFR3.944e-1637.38Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PC_GINBI3.944e-1639.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHOSH3.944e-1640.38Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_ASPNG5.151e-1639.22Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_MYCLE8.786e-1640.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_DROHY8.786e-1642.16Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P2_DROPS8.786e-1642.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME8.786e-1642.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_XANFL1.147e-1539.81Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]

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Properties
Property NameValue
Genbank descriptionC07010G05SK SaltLeaf1 Citrus clementina cDNA clone C07010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300486 ID=CX300486; Name=CX300486; organism=Citrus clementina; type=EST; length=542bp
AAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTCTC
GGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGG
TGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCTC
TCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGT
ATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATGG
TTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGTT
GTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACTA
AAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATTT
TTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAA
CACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCATTAATCATTATG
CAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAAAAAA
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