CX300486

Overview
NameCX300486
Unique NameCX300486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:982..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 321
            KG+ +G+ALRVPT             ++  AEEVNAA + +A+  LKGIL+  ++ +V  D                 +G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct:  221 KGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELV 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G++ RVPT +           K+   +E+ AA +E+    LKGIL   ++ LVS DF                +  + VK+IAWYDNEWGYS+RVVDL   VA
Sbjct:  225 GKLTGLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPT +           K    E++ AA +E ++ +LKGIL   ++ LVS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  228 GKLTGMAFRVPTCDVSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 44/108 (40.74%), Postives = 55/108 (50.93%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            KGKL G+A RVPT +          +K    EE+ A  +  A+ ++KG L   DEPLVS DF                +    VK++AWYDNEWGYS RV DL   VA
Sbjct:  271 KGKLTGMAFRVPTIDVSVVDLTCRLAKDATYEEICAEVKRRANGDMKGFLGYTDEPLVSTDFETEPISSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVA 378          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 336
            KGKLNGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  225 KGKLNGIAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 336
            KGKLNGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  225 KGKLNGIAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 327
            GKL G+A RVPTP+           K    +E+ AA +E+A+  +KGIL   ++ +VS DF                +  + VK+IAWYDNE+GYS RVVDL   +A+
Sbjct:  231 GKLTGMANRVPTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIAS 338          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 312
            KGKLNG+A+RV T N          +K+   EEVNAA +  A+ ELKGIL+   EPLV  ++                +   MVKV++WYDNE GYS RVV LA
Sbjct:  225 KGKLNGMAMRVATANVSVVDLVYELAKEVTVEEVNAALKAIAEGELKGILAYSIEPLVIRNYNGSTVSSTIDILSTMVIDGAMVKVVSWYDNETGYSHRVVALA 328          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPT +          +K+   +E+ AA +E ++ +LKGIL   +E +VS DF                +    VK++AWYDNEWGYS RVVDL
Sbjct:  228 GKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDL 329          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTP+           K    EE+ A  +++++NELKGIL   ++ +VS DF                + D  VK+++WYDNE+GYS RV+DL
Sbjct:  225 GKLTGMAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDL 326          
The following BLAST results are available for this feature:
BLAST of CX300486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
G3P_THEAQ2.556e-1540.19Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P_OMPOL2.556e-1540.19Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3PC_MESCR2.556e-1540.20Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PA_GUITH2.556e-1540.74Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P3_ANAVT2.556e-1538.94Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP2.556e-1538.94Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_BRUMA3.339e-1538.89Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_BACCO3.339e-1544.23Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PC_CRAPL3.339e-1540.20Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHIRA3.339e-1539.22Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionC07010G05SK SaltLeaf1 Citrus clementina cDNA clone C07010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300486 ID=CX300486; Name=CX300486; organism=Citrus clementina; type=EST; length=542bp
AAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTCTC
GGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGG
TGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCTC
TCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGT
ATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATGG
TTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGTT
GTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACTA
AAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATTT
TTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAA
CACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCATTAATCATTATG
CAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAAAAAA
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