CX300486

Overview
NameCX300486
Unique NameCX300486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:982..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPT +           KK    ++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  229 GKLTGMAFRVPTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDL 330          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+A+RVPT N           K    +++  A +++++NELKGIL   ++ +VS D                 +  + +K+++WYDNEWGYS+RVVDL   ++
Sbjct:  225 GKLTGMAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYIS 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+++RVPT N           K    E++  A +++AD  LKG+L+  ++ +VS D                 + D  VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  225 GKLTGMSMRVPTSNVSVVDLTVRIEKGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+++RVPTPN           K    +E+ A  +E+A+  L GIL   ++ +VS D                 +  + VK+IAWYDNEWGYS+RV+DL   VA
Sbjct:  225 GKLTGMSMRVPTPNVSVVDLTVRIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 327
            GKL G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS RVVDL    A+
Sbjct:  226 GKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTAS 333          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            GKL G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS+RVVDL    A
Sbjct:  226 GKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            GKL G+A RVPTPN           K    +E+ A   E++   LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  223 GKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 327
            GKL G+A RVPTPN           K    +++    +++A+  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  224 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 330
            GKL G++ RVPT +                +E+ AA + +++NE+KGIL   ++ +VS DF                + DD VK+++WYDNEWGYS RV+DL + +  N
Sbjct:  223 GKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKN 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 327
            GKL G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  224 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMAS 331          
The following BLAST results are available for this feature:
BLAST of CX300486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
G3PC_RANAC4.360e-1539.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_EMENI5.695e-1534.58Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_CRYPA5.695e-1536.45Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_CLAPU5.695e-1538.32Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P2_SCHPO5.695e-1536.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P1_SCHPO5.695e-1536.45Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_DROME5.695e-1541.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_RAT7.438e-1537.04Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PHYIN7.438e-1535.78Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_CRIGR9.714e-1537.04Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]

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Properties
Property NameValue
Genbank descriptionC07010G05SK SaltLeaf1 Citrus clementina cDNA clone C07010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300486 ID=CX300486; Name=CX300486; organism=Citrus clementina; type=EST; length=542bp
AAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTCTC
GGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGG
TGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCTC
TCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGT
ATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATGG
TTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGTT
GTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACTA
AAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATTT
TTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAA
CACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCATTAATCATTATG
CAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAAAAAA
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