CX300488

Overview
NameCX300488
Unique NameCX300488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 6.715e-38
Identity = 80/194 (41.24%), Postives = 120/194 (61.86%), Query Frame = 2
Query:   47 VKVYG-PAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEE-RGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAW 622
            +KV+G P   +  RV+  L EK ++FE  PVD+  G H+   +L L PFG +P ++DGD TL+ESRAI +Y AE+Y  +G +L+ +  ++ +     WL+VE   + P   ++  + +F    G++ D   V++ E KL KVLDVYE RL+KS++LAGD F+LADL HLP   YL+G  + + +   R  VS W
Sbjct:   52 IKVHGVPMSTATMRVLATLYEKDLQFELIPVDMRAGAHKQEAHLALNPFGQIPALEDGDLTLFESRAITQYLAEEYSEKGEKLISQDCKKVKATTNVWLQVEGQQFDPNASKLAFERVFKGMFGMTTDPAAVQELEGKLQKVLDVYEARLAKSEFLAGDSFTLADLHHLPAIHYLLG-TDSKVLFDSRPKVSEW 244          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.145e-37
Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = 2
Query:   47 VKVYG-PAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 634
            +KV+G PA  + +RV++ L EK ++FE   V+L  GEH+   ++   PFG +P  +DGDF ++ESRAI +Y A ++  +G  LL  T ++  ++   +E+E+H + P   ++  + +     G++ D+ +V++ E KL KVLDVYE RL +SKYLA D F+L DL  +P  QYL+G   K+ +  +R HVSAW  DI
Sbjct:    4 IKVFGHPASTATRRVLIALHEKNVDFEFVHVELKDGEHKKEPFILRNPFGKVPAFEDGDFKIFESRAITQYIAHEFSDKGNNLLS-TGKDMAIIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADI 198          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.353e-37
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 2
Query:   38 TMVVKVYGPAYAS-PKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGK-TTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFT-QYLVGPMEKEYMIRDRKHVSAWWDDI 634
            T  VKVYG A +    R ++ L E  +++E  P+    G+HR PE+L   PFG +PV++DGD TL+ESRAI R+   K++    ELLG    E+  +V+ WLEVEAH   PP   + V+ +FA  LG   ++ +V ++ EKL KVL+VYE RL+   YLAGDF SLADLS  PFT  + +   E   ++    HVSAWW  +
Sbjct:    3 TPAVKVYGWAISPFVSRALLALEEAGVDYELVPMSRQDGDHRRPEHLARNPFGKVPVLEDGDLTLFESRAIARHVLRKHKP---ELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDENVEKLKKVLEVYEARLATCTYLAGDFLSLADLS--PFTIMHCLMATEYAALVHALPHVSAWWQGL 199          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 78/197 (39.59%), Postives = 123/197 (62.44%), Query Frame = 2
Query:   47 VKVYG-PAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 634
            +KV+G PA  + +RV++ L EK ++FE   ++L  GEH+   ++   PFG +P  +DGDF L+ESRAI +Y A  Y  +G +L+   +++   +   +E+E+H + P   ++  + +     G++ D+ +V++ E KL KVLDVYE RL +SKYLA D F+L DL  +P  QYL+G   K+ +  +R HVSAW  DI
Sbjct:    4 IKVFGHPASTATRRVLIALHEKNLDFEFVHIELKDGEHKKEPFIFRNPFGKVPAFEDGDFKLFESRAITQYIAHFYSDKGNQLVSLGSKDIAGIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADI 199          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.185e-34
Identity = 82/203 (40.39%), Postives = 122/203 (60.10%), Query Frame = 2
Query:   47 VKVYG-PAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKY-RSQGTELLGKTT--EERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL----GLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQY-LVGPMEKEYMIRDRKHVSAWWD 628
            VKV+G P   +  RV++ L E   E+E  P+D + GEH+ P++++L PF  +P  QDGD  L+ESRAI +Y   KY  + G +LLG+ +  EE  +V+ W EVEA  Y+P I  +  + +    +    G + ++ +V +S E+L  VL +YE RL KS+YLAGD  + ADL+H+PFT Y +  P  K  +  D   V AWW+
Sbjct:    4 VKVFGHPMLTNVARVLLFLEEVGAEYELVPMDFVAGEHKRPQHVQLNPFAKMPGFQDGDLVLFESRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSITFADLNHIPFTFYFMTTPYAK--VFDDYPKVKAWWE 204          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.641e-34
Identity = 82/198 (41.41%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   47 VKVYGPAYA-SPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL-GLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 634
            +K+YG   + +  R +  L E   E+E  P+D  KGEH+ P++L   PFG +P +QDGD  L+ESRAI +Y   K + +   L     +E  +V+ WLEVE++ Y P +  +  Q L    + G   DEK+V+++ EKL KVL+VYE RL+K KYLAGD+ S+ADLSH+  T  L G      ++    HV AWW D+
Sbjct:    4 MKLYGSTLSWNVTRCVAVLEEAGAEYEIVPLDFSKGEHKAPDHLARNPFGQVPALQDGDLFLWESRAICKYVCRKNKPE--LLKDGDLKESAMVDVWLEVESNQYTPALNPILFQCLIRPMMFGAPPDEKVVEENLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGTVCL-GATPHASVLDAYPHVKAWWTDL 198          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 81/198 (40.91%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   47 VKVYGPAYA-SPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGK-TTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWWDDI 634
            +K+YG   + +  R    L E   ++E  P++    EH++PE+L   PFG +P +QDGD  L+ESRAI +Y A K +    ELL +   EE  +V+ W+EVEA+ Y   +  +  Q+L +  LG + D+K+V ++ EKL KVL+VYE RL+K KYLAGDF SLADL+H+  T  L        ++    HV AWW  +
Sbjct:    4 MKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAARKNKP---ELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYAS-VLDAYPHVKAWWSGL 197          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF5_ARATH (Glutathione S-transferase PM239X14 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.235e-33
Identity = 85/200 (42.50%), Postives = 120/200 (60.00%), Query Frame = 2
Query:   41 MVVKVYGPAYAS-PKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYL-KLQPFGALPVIQDGDFT-LYESRAIIRYYAEKYRSQGTELLGKTTEER--GLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPMEKEYMIRDRKHVSAWW 625
            + VK+YG AY++  KRV     E  ++ +  PVDL+KGEH+ P YL    PFG +PV++D D T +YESRAI RY   KY  +G+ LL   ++ +  GL EQ   VE  ++ PP   +  + +FA   GL  +E+L KK  + L   +D YE  LSK KYLAG+ F+LADL HLP+   +V  +E   ++  + HV AWW
Sbjct:    2 VTVKLYGMAYSTCTKRVYTTAKEIGVDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLEDEDGTKIYESRAISRYLVAKY-GKGSSLLPSPSDPKAYGLFEQAASVEYSSFDPPASSLAYERVFAGMRGLKTNEELAKKYVDTLNAKMDGYERILSKQKYLAGNDFTLADLFHLPYGA-MVAQLEPT-VLDSKPHVKAWW 198          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTF2_WHEAT (Glutathione S-transferase 2 OS=Triticum aestivum GN=GSTA2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 80/203 (39.41%), Postives = 120/203 (59.11%), Query Frame = 2
Query:   47 VKVYG-PAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKY-RSQGTELLGKTT--EERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKL----GLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQY-LVGPMEKEYMIRDRKHVSAWWD 628
            VKV+G P   +  RV++ L E   E+E  PVD + GEH+ P++++L PF  +P  QDG+    +SRAI +Y   KY  + G +LLG+ +  EE  +V+ W EVEA  Y+P I  +  + +    +    G + ++ +V +S E+L  VL +YE RL KS+YLAGD  S ADL+H+PFT Y +  P  K  +  +   V AWW+
Sbjct:    4 VKVFGHPMLTNVARVLLFLEEVGAEYELVPVDFVAGEHKRPQHVQLNPFAKMPGFQDGESLHIKSRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSISFADLNHIPFTFYFMTTPYAK--VFDEYPKVKAWWE 204          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GST1C_ANOGA (Glutathione S-transferase 1, isoform C OS=Anopheles gambiae GN=GstD1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 2
Query:   56 YGPAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHL-PFTQYLVGPMEKEYMIRDRKHVSAWWDDI 634
            Y P  A  + V +      +E      DL+KGEH  PE+LK+ P   +P + D  F L+ESRAI  Y AEKY  +  +L  K  ++R +V Q +  +    +    +     +FA +     +E+ +K +   L   LD +       KY+AGD  ++ADLS L   + Y V   +    +   +HV+AW+++I
Sbjct:    5 YLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYLAEKY-GKDDKLYPKDPQKRAVVNQRMYFDMGTLYQRFADYYYPQIFAKQPANPENEQKMKDAVGFLNSFLDGH-------KYVAGDSLTIADLSILATISTYDVAGFD----LAKYQHVAAWYENI 186          
The following BLAST results are available for this feature:
BLAST of CX300488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GSTF6_ARATH6.715e-3841.24Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GSTF1_ARATH1.145e-3740.10Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF4_MAIZE4.353e-3744.06Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GST11_ARATH5.685e-3739.59Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_WHEAT1.185e-3440.39Glutathione S-transferase 1 OS=Triticum aestivum G... [more]
GSTF2_ORYSJ2.641e-3441.41Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]
GSTF1_MAIZE1.712e-3340.91Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]
GSTF5_ARATH2.235e-3342.50Glutathione S-transferase PM239X14 OS=Arabidopsis ... [more]
GSTF2_WHEAT2.472e-3239.41Glutathione S-transferase 2 OS=Triticum aestivum G... [more]
GST1C_ANOGA1.609e-1530.41Glutathione S-transferase 1, isoform C OS=Anophele... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010G07SK SaltLeaf1 Citrus clementina cDNA clone C07010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300488 ID=CX300488; Name=CX300488; organism=Citrus clementina; type=EST; length=635bp
AGAGAAAAAGTTGAGAAAGAGAATAGCAAAAGCAACAACAATGGTGGTAA
AGGTGTATGGTCCAGCTTATGCTTCTCCCAAACGAGTGATTGTGTGCTTG
ATTGAGAAGCAAATCGAATTTGAAACTGCTCCCGTTGATCTCATCAAAGG
AGAGCATAGAAATCCTGAGTACCTCAAATTGCAGCCTTTCGGTGCTCTGC
CTGTCATTCAAGATGGAGATTTTACGTTATACGAATCTCGAGCTATCATA
AGGTACTACGCCGAAAAGTACAGGTCTCAAGGAACCGAACTTCTGGGAAA
AACAACTGAAGAAAGAGGCCTTGTGGAGCAATGGCTAGAGGTAGAGGCAC
ACAACTATCACCCACCAATTTACGAGATGACTGTGCAACTTTTATTTGCC
TCCAAGTTGGGACTTTCTGTTGATGAAAAATTGGTAAAGAAGAGTGAAGA
AAAACTTGGAAAAGTTCTTGATGTTTACGAGGAGAGGCTCTCAAAGAGCA
AGTATTTGGCAGGAGATTTCTTCAGCCTGGCTGATCTGAGTCACCTTCCA
TTTACTCAATACTTGGTTGGGCCGATGGAGAAGGAGTACATGATTAGAGA
CAGAAAGCATGTGAGTGCTTGGTGGGATGATATTA
back to top