CX300488

Overview
NameCX300488
Unique NameCX300488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTT3_DROME (Glutathione S-transferase D3 OS=Drosophila melanogaster GN=GstD3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 46/176 (26.14%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  113 IEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQY--LVGPMEKEYMIRDRKHVSAWWDDI 634
            +EF    ++ +KGE  NP+++K+ P  ++P + D  FT++ESRAI+ Y  EKY  +   L  K  +++ ++ Q L  +    +P +     +     + G   D K V+++ + L   L+  +       Y+AGD +++AD++ L       +VG     + I    +V+ W+D +
Sbjct:    8 LEFNKKIINTLKGEQMNPDFIKINPQHSIPTLVDNGFTIWESRAILVYLVEKY-GKDDALYPKDIQKQAVINQRLYFDMALMYPTLANYYYKAFTTGQFGSEEDYKKVQETFDFLNTFLEGQD-------YVAGDQYTVADIAILANVSNFDVVG-----FDISKYPNVARWYDHV 170          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: DCMA_METS1 (Dichloromethane dehalogenase OS=Methylophilus sp. (strain DM11) GN=dcmA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 2
Query:   35 TTMVVKVYGPAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYL-KLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHN-------YHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEER-LSKSKYLAGDFFSLADL-------SH-----LPFTQYLVGPMEKEYMIR--DRKH---VSAW 622
            +T +  ++ PA    + V   ++E  IEF+   VD+    +  PE+  +  P G +P++ DGDFT++ES AI+ Y +EKY    +   G T EERG ++Q++   A+        +H  I+     +++      +V+   V K    L +  D+ E+  L    YL G+  S  DL       SH     +P + +   P  K +  R  DR+H   VSAW
Sbjct:    2 STKLRYLHHPASQPCRAVHQFMLENNIEFQEEIVDITTDINEQPEFRERYNPTGQVPILVDGDFTIWESAAIVYYLSEKY-DCSSSWWGSTLEERGHIQQYMHWYAYTLRLGGGAFHWTIF---APMIYGYDKDFTVE---VTKGRFLLYESFDILEKYWLKDGDYLCGNTLSYPDLATCQDLVSHDAGRIIPTSMWDSHPKVKAWFARMMDREHAKTVSAW 216          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTZ2_DIACA (Glutathione S-transferase 2 (Fragment) OS=Dianthus caryophyllus GN=GST2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 46/117 (39.32%), Postives = 61/117 (52.14%), Query Frame = 2
Query:   83 RVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKL 433
            RV + L  K ++FE   VDL+KGEH  PE+LKL P G +P +  GD  + +S AII Y  EK+      LL +  ++R L  Q   + A N   P   + V      KLG   DEKL
Sbjct:   22 RVRIALHLKGLDFEYKAVDLLKGEHLTPEFLKLNPLGYVPALVHGDIVIADSLAIIMYLEEKFPE--NPLLPRDLQKRALNYQAANIVASNIQ-PFQNLAVLNYIEEKLG--SDEKL 133          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTT4_MOUSE (Glutathione S-transferase theta-4 OS=Mus musculus GN=Gstt4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 48/169 (28.40%), Postives = 88/169 (52.07%), Query Frame = 2
Query:   41 MVVKVYGPAYASPKRVIVCLIEKQ-IEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYE-MTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSK-YLAGDFFSLADL 538
            M +++Y    ++P R +     K  I F+   VDL+KG H + EY+++ P   LP ++DG F L ES AI+ Y   KY S  +         R  V++++  +      P+ + + ++L+     G  V  + ++K+ +++ + L  +EE+  + K ++ GD  SLADL
Sbjct:    1 MGLELYMDLLSAPCRAVYIFARKNGIPFDFQFVDLLKGHHHSKEYIEINPLRKLPSLKDGKFILSESVAILFYLCRKY-SAPSHWYPPDLHMRARVDEFMAWQHTAIQVPMSKILWIKLIIPMITGEEVPTERLEKTLDEVKRNLQQFEEKFLQDKMFITGDHISLADL 168          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GST1_SCHPO (Glutathione S-transferase 1 OS=Schizosaccharomyces pombe GN=gst1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 51/179 (28.49%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   38 TMVVKVYGPAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQD---GDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYL 565
            T+    +GP   +P +V+  L E  + +ET  V+  K E ++PE+L L P G +P + D    D+T++ES AI+ Y A+KY ++    L +   E   V Q+L  +A        +     ++  +L +S     + +   ++ +VL V E+ L    YL  + F++ADLS + +  +L
Sbjct:    5 TLWSHAHGP---NPWKVVQALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISA----ITRYRNEIKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFL 176          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTT4_RAT (Glutathione S-transferase theta-4 OS=Rattus norvegicus GN=Gstt4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 47/169 (27.81%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   41 MVVKVYGPAYASPKRVIVCLIEKQ-IEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYE-MTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSK-YLAGDFFSLADL 538
            M +++Y    ++P R +     K  I F+   VDL+KG H + EY+++ P   +P ++DG F L ES AI+ Y   KY S  +         R  V++++  +      P+ + + ++L+     G  V  + + K+ +++ K +  +EE+  + K ++ GD  SLADL
Sbjct:    1 MGLELYMDLLSAPCRAVYIFARKNGIPFDFQFVDLLKGHHHSKEYIEINPLRKVPSLRDGKFILSESVAILCYLCRKY-SAPSHWYPPDLHMRARVDEFMAWQHTAIQVPMSKILWIKLIIPMITGEEVPTERLDKTLDEVNKNIKQFEEKFLQDKLFITGDHISLADL 168          
BLAST of CX300488 vs. ExPASy Swiss-Prot
Match: GSTT4_DROME (Glutathione S-transferase D4 OS=Drosophila melanogaster GN=GstD4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 45/164 (27.44%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   56 YGPAYASPKRVIVCLIEKQIEFETAPVDLIKGEHRNPEYLKLQPFGALPVIQDGDFTLYESRAIIRYYAEKYRSQGTELLGKTTEERGLVEQWLEVEAHNYHPPIYEMTVQLLFASKLGLSVDEKLVKKSEEKLGKVLDVYEERLSKSKYLAGDFFSLADLSHL 547
            Y P  +  + +I+      +E     + + +GEH  PE+LKL P   +P + D  F ++ESRAI  Y  EKY  +   L     ++R L+ Q L  +    H    +     +   +LG + + K V+ + E     LD++   L    Y+AG   ++AD++ L
Sbjct:    5 YSPRSSGSRTIIMVAKALGLELNKKQLRITEGEHLKPEFLKLNPQHTIPTLVDNGFAIWESRAIAVYLVEKY-GKDDSLFPNDPQKRALINQRLYFDMGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFE----FLDIF---LEGQDYVAGSQLTVADIAIL 160          
The following BLAST results are available for this feature:
BLAST of CX300488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GSTT3_DROME8.266e-1226.14Glutathione S-transferase D3 OS=Drosophila melanog... [more]
DCMA_METS18.266e-1228.83Dichloromethane dehalogenase OS=Methylophilus sp. ... [more]
GSTZ2_DIACA1.080e-1139.32Glutathione S-transferase 2 (Fragment) OS=Dianthus... [more]
GSTT4_MOUSE1.080e-1128.40Glutathione S-transferase theta-4 OS=Mus musculus ... [more]
GST1_SCHPO1.841e-1128.49Glutathione S-transferase 1 OS=Schizosaccharomyces... [more]
GSTT4_RAT2.405e-1127.81Glutathione S-transferase theta-4 OS=Rattus norveg... [more]
GSTT4_DROME5.358e-1127.44Glutathione S-transferase D4 OS=Drosophila melanog... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010G07SK SaltLeaf1 Citrus clementina cDNA clone C07010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300488 ID=CX300488; Name=CX300488; organism=Citrus clementina; type=EST; length=635bp
AGAGAAAAAGTTGAGAAAGAGAATAGCAAAAGCAACAACAATGGTGGTAA
AGGTGTATGGTCCAGCTTATGCTTCTCCCAAACGAGTGATTGTGTGCTTG
ATTGAGAAGCAAATCGAATTTGAAACTGCTCCCGTTGATCTCATCAAAGG
AGAGCATAGAAATCCTGAGTACCTCAAATTGCAGCCTTTCGGTGCTCTGC
CTGTCATTCAAGATGGAGATTTTACGTTATACGAATCTCGAGCTATCATA
AGGTACTACGCCGAAAAGTACAGGTCTCAAGGAACCGAACTTCTGGGAAA
AACAACTGAAGAAAGAGGCCTTGTGGAGCAATGGCTAGAGGTAGAGGCAC
ACAACTATCACCCACCAATTTACGAGATGACTGTGCAACTTTTATTTGCC
TCCAAGTTGGGACTTTCTGTTGATGAAAAATTGGTAAAGAAGAGTGAAGA
AAAACTTGGAAAAGTTCTTGATGTTTACGAGGAGAGGCTCTCAAAGAGCA
AGTATTTGGCAGGAGATTTCTTCAGCCTGGCTGATCTGAGTCACCTTCCA
TTTACTCAATACTTGGTTGGGCCGATGGAGAAGGAGTACATGATTAGAGA
CAGAAAGCATGTGAGTGCTTGGTGGGATGATATTA
back to top