CX300489

Overview
NameCX300489
Unique NameCX300489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_CHLRE (Photosystem I reaction center subunit IV, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.888e-15
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            KRG+ VKILR ESYW+N +G VV+VDQ    RYPVVVRF   NYA V+TNNYALDE+   K
Sbjct:   38 KRGSLVKILRPESYWFNQVGKVVSVDQSGV-RYPVVVRFENQNYAGVTTNNYALDEVVAAK 97          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_GUITH (Photosystem I reaction center subunit IV OS=Guillardia theta GN=psaE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            KRG+KV+ILR+ESYWY  +G+V  VD     RYPVVVRF KV+Y+ V+TNN++LDE+ EV
Sbjct:    3 KRGSKVRILRKESYWYQEVGTVATVDTSG-IRYPVVVRFEKVSYSGVNTNNFSLDEVIEV 61          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_ANASP (Photosystem I reaction center subunit IV OS=Anabaena sp. (strain PCC 7120) GN=psaE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 35/61 (57.38%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR ESYW+  +G+V +VDQ    +YPV+VRF+KVNYA ++TNN+A+DE+ EV+
Sbjct:    3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYAGINTNNFAVDELIEVE 62          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_MASLA (Photosystem I reaction center subunit IV OS=Mastigocladus laminosus GN=psaE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR ESYW+  IG+V +++Q    RYPV+VRF+KVNYA V+TNN+A  E+ EV+
Sbjct:    3 QRGSKVRILRPESYWFQDIGTVASIEQGGTIRYPVIVRFDKVNYAGVNTNNFAEYELVEVE 63          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_ANAVT (Photosystem I reaction center subunit IV OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaE PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 34/61 (55.74%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR ESYW+  +G+V +VDQ    +YPV+VRF+KVNY+ ++TNN+A+DE+ EV+
Sbjct:    3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYSGINTNNFAVDELIEVE 62          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_CYACA (Photosystem I reaction center subunit IV OS=Cyanidium caldarium GN=psaE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 34/61 (55.74%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            K+G++V+ILR ESYW+N IG+V  VDQ    RYPV+VRF+KVNY+ ++TNN+A++E+ E++
Sbjct:    3 KKGSQVRILRPESYWHNEIGTVATVDQSG-IRYPVIVRFDKVNYSGINTNNFAVNELVEIQ 62          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_SYNJA (Photosystem I reaction center subunit IV OS=Synechococcus sp. (strain JA-3-3Ab) GN=psaE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RGAKV++LR+ESYWY  +G+V AVD      YPV+VRF+K+NY N++TNN+  DE+E V+
Sbjct:    4 QRGAKVRVLRKESYWYRDVGTVAAVDTSG-ILYPVIVRFDKINYYNINTNNFREDELEVVE 63          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_NOSS8 (Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC 8009) GN=psaE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR ESYW+  +G+V +VDQ    +YPV+VRF KVNY+ ++TNN+A DE+ EV+
Sbjct:    3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFEKVNYSGINTNNFAEDELVEVE 62          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_TRIEI (Photosystem I reaction center subunit IV OS=Trichodesmium erythraeum (strain IMS101) GN=psaE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.576e-14
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYALDEIEEV 252
            KRG+KV+ILR+ESYWY  +G+V +VD+    +YPV+VRF+KVNYA        V+TNN+A+DE+ E+
Sbjct:    3 KRGSKVRILRKESYWYQDVGTVASVDKS-GIKYPVIVRFDKVNYAGSSGSPTGVNTNNFAIDEVVEI 68          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_NOSP7 (Photosystem I reaction center subunit IV OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.576e-14
Identity = 33/61 (54.10%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 255
            +RG+KV+ILR ESYW+  +G+V ++DQ    +YPV+VRF KVNY+ ++TNN+A DE+ EV+
Sbjct:    3 QRGSKVRILRPESYWFQDLGTVASIDQSG-IKYPVIVRFEKVNYSGINTNNFAQDELVEVE 62          
The following BLAST results are available for this feature:
BLAST of CX300489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSAE_CHLRE3.888e-1565.57Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_GUITH1.131e-1461.67Photosystem I reaction center subunit IV OS=Guilla... [more]
PSAE_ANASP1.131e-1457.38Photosystem I reaction center subunit IV OS=Anabae... [more]
PSAE_MASLA1.930e-1457.38Photosystem I reaction center subunit IV OS=Mastig... [more]
PSAE_ANAVT2.520e-1455.74Photosystem I reaction center subunit IV OS=Anabae... [more]
PSAE_CYACA3.291e-1455.74Photosystem I reaction center subunit IV OS=Cyanid... [more]
PSAE_SYNJA5.614e-1455.74Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_NOSS87.332e-1455.74Photosystem I reaction center subunit IV OS=Nostoc... [more]
PSAE_TRIEI9.576e-1453.73Photosystem I reaction center subunit IV OS=Tricho... [more]
PSAE_NOSP79.576e-1454.10Photosystem I reaction center subunit IV OS=Nostoc... [more]

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Properties
Property NameValue
Genbank descriptionC07010G08SK SaltLeaf1 Citrus clementina cDNA clone C07010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300489 ID=CX300489; Name=CX300489; organism=Citrus clementina; type=EST; length=402bp
GCTGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCC
CAAGCCACCTCCGATTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCA
GGAGGGAGTCCTACTGGTACAATGGCATTGGATCTGTGGTTGCTGTTGAC
CAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAA
CTATGCAAATGTATCGACGAACAACTATGCATTGGATGAGATCGAAGAAG
TTAAATGAGTTATGTAATTTTGATTTGCATATTATTCCCCGCTCTAGATT
AAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAGTGAATTCTTC
TTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAAAAAAAAAAAAAAA
AA
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