CX300489

Overview
NameCX300489
Unique NameCX300489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_PHATR (Photosystem I reaction center subunit IV OS=Phaeodactylum tricornutum GN=psaE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   76 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            RG++V+ILR ESYW+N +G+V  VDQ    RYP VVRF KVNY+  +TNN+AL E+ EV
Sbjct:    4 RGSEVRILREESYWFNEVGTVATVDQSG-IRYPAVVRFEKVNYSGTNTNNFALSELVEV 61          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_ODOSI (Photosystem I reaction center subunit IV OS=Odontella sinensis GN=psaE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   76 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            RG+KV+ILR+ESYW+N +G++  +DQ    RYP VVRF  VNY+  +TNN+AL+E+ EV
Sbjct:    4 RGSKVRILRKESYWFNQVGTIATIDQSG-IRYPAVVRFENVNYSGTNTNNFALEELIEV 61          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_PORYE (Photosystem I reaction center subunit IV OS=Porphyra yezoensis GN=psaE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.059e-12
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 243
            +RG+KVKILR+ESYWY  IG+V A+D+    +YPV+VRF KVNY NV+TN++A  E+
Sbjct:    2 ERGSKVKILRKESYWYQEIGTVAAIDKS-GIKYPVLVRFEKVNYNNVNTNSFADTEL 57          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_PORUM (Photosystem I reaction center subunit IV OS=Porphyra umbilicalis GN=psaE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.059e-12
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 243
            +RG+KVKILR+ESYWY  IG+V A+D+    +YPV+VRF KVNY NV+TN++A +E+
Sbjct:    2 ERGSKVKILRKESYWYQEIGTVAAMDKS-GIKYPVLVRFEKVNYNNVNTNSFADNEL 57          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_PORPU (Photosystem I reaction center subunit IV OS=Porphyra purpurea GN=psaE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.059e-12
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 243
            +RG+KVKILR+ESYWY  IG+V A+D+    +YPV+VRF KVNY NV+TN++A +E+
Sbjct:    2 ERGSKVKILRKESYWYQEIGTVAAMDKS-GIKYPVLVRFEKVNYNNVNTNSFADNEL 57          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_FREDI (Photosystem I reaction center subunit IV OS=Fremyella diplosiphon GN=psaE PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.059e-12
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 252
            +RG+KV+ILR ESYW+  +G+V ++DQ    +Y V+VRF+KVNY+ ++TNN+A DE+ EV
Sbjct:    2 QRGSKVRILRPESYWFQDVGTVASIDQSG-IKYSVIVRFDKVNYSGINTNNFAEDELLEV 60          
BLAST of CX300489 vs. ExPASy Swiss-Prot
Match: PSAE_SYNP2 (Photosystem I reaction center subunit IV OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaE PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   73 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 252
            +RG+KVKILR+ESYWY  +G+V ++D+     YPV+VRFNKVNY         ++TNN+A  E+E V
Sbjct:    4 ERGSKVKILRKESYWYGDVGTVASIDKS-GIIYPVIVRFNKVNYNGFSGSAGGLNTNNFAEHELEVV 69          
The following BLAST results are available for this feature:
BLAST of CX300489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSAE_PHATR1.251e-1359.32Photosystem I reaction center subunit IV OS=Phaeod... [more]
PSAE_ODOSI1.251e-1355.93Photosystem I reaction center subunit IV OS=Odonte... [more]
PSAE_PORYE1.059e-1259.65Photosystem I reaction center subunit IV OS=Porphy... [more]
PSAE_PORUM1.059e-1259.65Photosystem I reaction center subunit IV OS=Porphy... [more]
PSAE_PORPU1.059e-1259.65Photosystem I reaction center subunit IV OS=Porphy... [more]
PSAE_FREDI1.059e-1253.33Photosystem I reaction center subunit IV OS=Fremye... [more]
PSAE_SYNP22.608e-1150.75Photosystem I reaction center subunit IV OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC07010G08SK SaltLeaf1 Citrus clementina cDNA clone C07010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300489 ID=CX300489; Name=CX300489; organism=Citrus clementina; type=EST; length=402bp
GCTGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCC
CAAGCCACCTCCGATTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCA
GGAGGGAGTCCTACTGGTACAATGGCATTGGATCTGTGGTTGCTGTTGAC
CAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAA
CTATGCAAATGTATCGACGAACAACTATGCATTGGATGAGATCGAAGAAG
TTAAATGAGTTATGTAATTTTGATTTGCATATTATTCCCCGCTCTAGATT
AAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAGTGAATTCTTC
TTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAAAAAAAAAAAAAAA
AA
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