CX300495

Overview
NameCX300495
Unique NameCX300495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 7.110e-100
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPII
Sbjct:   83 DIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 280          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 361.303 bits (926), Expect = 2.069e-99
Identity = 175/198 (88.38%), Postives = 185/198 (93.43%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPII
Sbjct:   80 DITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPII 277          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 3.902e-98
Identity = 173/198 (87.37%), Postives = 183/198 (92.42%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPII
Sbjct:   88 DITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPII 285          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 2.529e-97
Identity = 176/198 (88.89%), Postives = 182/198 (91.92%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII
Sbjct:   88 DITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPII 283          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 8.419e-93
Identity = 163/198 (82.32%), Postives = 178/198 (89.90%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPII
Sbjct:   82 DIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPII 279          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 6.258e-80
Identity = 147/199 (73.87%), Postives = 165/199 (82.91%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            DITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+
Sbjct:   58 DITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIV 254          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.648e-54
Identity = 105/151 (69.54%), Postives = 123/151 (81.46%), Query Frame = 3
Query:  147 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPII
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPII 154          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.648e-54
Identity = 105/151 (69.54%), Postives = 123/151 (81.46%), Query Frame = 3
Query:  147 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 596
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPII
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPII 154          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.759e-27
Identity = 79/154 (51.30%), Postives = 81/154 (52.60%), Query Frame = 3
Query:    3 DITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 464
            DITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+
Sbjct:   12 DITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of CX300495 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  294 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 476
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of CX300495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_SOLPN7.110e-10087.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.069e-9988.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.902e-9887.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.529e-9788.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.419e-9382.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE6.258e-8073.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.648e-5469.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.648e-5469.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.759e-2751.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX1.470e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC07010H03SK SaltLeaf1 Citrus clementina cDNA clone C07010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300495 ID=CX300495; Name=CX300495; organism=Citrus clementina; type=EST; length=596bp
AAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCC
ATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAG
CCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACA
TTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTC
ATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGG
CAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGG
GCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCT
GGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACAT
TATCAAGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAG
GAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATG
GTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACT
CCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATA
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