CX300501

Overview
NameCX300501
Unique NameCX300501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.352e-27
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP   +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   15 MVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.684e-27
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    3 ILVTAPVTNAI-TCGQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L T P   A+ TCGQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.424e-27
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 3
Query:    3 ILVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP+   AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   16 MVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.424e-27
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            + + A V  AITCG V +SL+PC+ +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   15 VFIVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.696e-27
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 3
Query:    3 ILVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP+   AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   16 MVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    6 LVTAPVT-NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            +V AP+  +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   15 IVIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    3 ILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++V AP   A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   15 MVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    6 LVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 308
            ++ AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   16 MIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    3 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            ++V A  T+  AI+CGQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   15 VVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CX300501 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.285e-26
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 ILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 305
            +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   16 LLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CX300501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP2_SOLLC4.352e-2755.88Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_DAUCA5.684e-2755.34Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP6_LENCU7.424e-2757.28Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP4_ARATH7.424e-2752.94Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_LENCU9.696e-2756.31Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_CICAR2.160e-2657.84Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SOLPN2.160e-2655.88Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP5_LENCU4.812e-2654.90Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_SORBI4.812e-2656.31Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI6.285e-2655.34Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC07010H10SK SaltLeaf1 Citrus clementina cDNA clone C07010H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300501 ID=CX300501; Name=CX300501; organism=Citrus clementina; type=EST; length=392bp
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
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