CX300505

Overview
NameCX300505
Unique NameCX300505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9479 contig Ccv1_Contig9479:237..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300505 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 3 
Query:  261 TALFFLEKDLHPGMKMNLHFTQTSNGAT-FLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMID 536
            T +FF E+ +  G ++   F   +  A  FL RQ A S PF++  LP +   F V   S     M+ T++ CE P I GE K+CATSLE++++
Sbjct:  166 TTVFFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVE 258
[Close]
BLAST of CX300505 vs. ExPASy Swiss-Prot
Match: BURP7_ORYSJ (BURP domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=BURP7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:  267 LFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIM 452
            +FFLEKDL PG K+ LHFT+ + GA  L R  A S P +++KLPEI +Q SV  GS  A+ M
Sbjct:   64 VFFLEKDLFPGSKLTLHFTRATAGAALLPRGRADSVPLATEKLPEILSQLSVPAGSPAADAM 125
The following BLAST results are available for this feature:
BLAST of CX300505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RAF1A_WHEAT3.791e-1137.63Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP7_ORYSJ4.952e-1153.23BURP domain-containing protein 7 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC07011A04SK SaltLeaf1 Citrus clementina cDNA clone C07011A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300505 ID=CX300505; Name=CX300505; organism=Citrus clementina; type=EST; length=701bp
GCACCTCTGTCAACGTAGGGAAGGGTGGTGTCAATGTGGATGCAGGGAAA
GGAATGCCCGGTGGTGGCACCCATGTGAATGTTGGGGGTAAGGGCGTTGG
TGTAAACACTGGAAAGCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAG
GAGGAGTATCCGTAAGTACAGGACACAAGGGAAAGCCAGTTTATGTTGGA
GTAAGCCCATTCAACTATGTATATGCTGCAAATGAGAACCAACTCCATGA
TGACCCGAATACAGCTCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGCA
TGAAGATGAACTTGCACTTCACTCAAACTTCAAATGGAGCAACTTTCTTA
TCTCGCCAAGCTGCCAAATCAACTCCTTTCTCGTCTGACAAATTGCCTGA
GATCTTTAACCAGTTTTCCGTGAAACCTGGATCAGTTGAAGCTGAAATAA
TGCAGAACACAATCAAAGAGTGTGAAGACCCTGGCATTAAAGGAGAGCAG
AAATATTGTGCAACTTCACTGGAGTCAATGATTGACTTCAGCACTTTCTA
AGCTTGGAAAGAGTGTTCAGGCAATTTCTACGGAGGTAAAAAAGGAACCA
AGATGCAGACATATCAATCGCAGCTGGAGTGAAGCAGATGGCAGCTGACA
AATCAGTAGTGTGCCATAGCAGAACTATCCATATGCTGTATCTACTGCCA
T
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