CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOUR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.041e-31
Identity = 71/154 (46.10%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            ++  IIPAR+AS+RFEGK L +I+GKPM+Q  +ER+  A+ +  ++VATDDE+IA     FG    MTS     GT+R  E   +L+   DI+VN+QGDEPLIEP +ID  +K L      +  T  T +K   D   PN VK V D  GYA+Y
Sbjct:    2 KITAIIPARYASTRFEGKALADIMGKPMVQHVYERTAKASLVSEVIVATDDERIAAAVHAFGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDEPLIEPAMIDEAIKPLAEDSSVMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PARUW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.847e-31
Identity = 74/156 (47.44%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIY 585
            +++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S  A+ L  L+VATDDE+I E  + F   V+MTSE C  GT+R  E L    +      +VNIQGDEP + P  I+  V+AL   P    ST VT  L  E+A + + VKCV+D  G A+Y
Sbjct:    9 QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRSFNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALY 164          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PARD8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.847e-31
Identity = 72/158 (45.57%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIY 585
            + +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K    LD + VATDD +I    + FG  V+MTS+  R+GT+RC EA QK+ + YD++VNIQGDEP I PE I   +K   A  +   +T V   + +D      F+PN  K V++ +  A+Y
Sbjct:    3 KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKAFGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADANTQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_LEPBL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=kdsB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.155e-30
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            +++G+IPAR+ASSRF GKPLV I  K MI+ T+  +  +T L  LVVATDD +I E  Q FG + +MT     +GT+R  E +  L  +Y I++NIQGDEP IEPE+IDGV     + P+   STA   L       DPNRVK ++D +G AIY
Sbjct:    3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQGFGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_LEPBJ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=kdsB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.155e-30
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            +++G+IPAR+ASSRF GKPLV I  K MI+ T+  +  +T L  LVVATDD +I E  Q FG + +MT     +GT+R  E +  L  +Y I++NIQGDEP IEPE+IDGV     + P+   STA   L       DPNRVK ++D +G AIY
Sbjct:    3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQGFGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_DESAA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.155e-30
Identity = 72/155 (46.45%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +VV IIPAR+ S+RFE KPL  I GKPMIQR +ER+  A+++  + VATDDE+I    ++FG   +MTS++CR+GT+R  EA + L     DIVVN+QGD+P+ +PE ID V   L   P    +T A   +   +  DP  VK V D  G+A+Y
Sbjct:    2 KVVVIIPARYGSTRFEAKPLALIAGKPMIQRVYERAAAASSVTGVAVATDDERIVSAVEKFGGKAVMTSDACRSGTDRVFEAGRTLGLTGSDIVVNVQGDQPVFDPECIDEVTAPLIGDPGTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_LEPIN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira interrogans GN=kdsB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.509e-30
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +++G+IPAR+ASSRF GKPL  I  K MI+ T+  +  ++ L  LVVATDD +I E  Q+FG   +MTS    +GT+R  E   +   +Y I+VNIQGDEP IEPE+IDGV     + P+   ST AV  L    A D NRVK ++D +G AIY
Sbjct:    4 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQKFGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_LEPIC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=kdsB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.509e-30
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +++G+IPAR+ASSRF GKPL  I  K MI+ T+  +  ++ L  LVVATDD +I E  Q+FG   +MTS    +GT+R  E   +   +Y I+VNIQGDEP IEPE+IDGV     + P+   ST AV  L    A D NRVK ++D +G AIY
Sbjct:    4 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQKFGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SYNFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=kdsB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.574e-30
Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            R+VGIIPAR+ SSRF GKPLV+ILGKPMI+  +ERS  A  LD L+VATDD +IA     FG + ++T     +GT+R  EA + LE    DIVVNIQGDEPL+   +I+ +V+ALQ       +T A  S   +D  +PN VK V+D    A+Y
Sbjct:    2 RIVGIIPARYQSSRFPGKPLVDILGKPMIRHVYERSARAGCLDRLIVATDDARIAAAVAGFGGEALLTRADHASGTDRLAEAARLLELDGADIVVNIQGDEPLVNHRMIEALVEALQCDRHCPMATLAFPSESLQDYNNPNVVKVVLDRGLRALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila abortus GN=kdsB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.391e-30
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query:  112 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIY 585
            + F S+ VG++PAR+ S RF GKPL  ILGK +IQRT+E    + TLD +VVATDD++I +    FG   +MTS  C NGTER  E + +   + +I+VNIQGDEP +   ++D +V+ L+  P+    T V  +    +     +VKCV D +G A+Y
Sbjct:    4 QTFISKKVGVLPARWGSVRFPGKPLAMILGKSLIQRTYENIIQSETLDKVVVATDDQRIMDHVLDFGGACLMTSPECANGTERMAETVSRYFPEAEIMVNIQGDEPCLRHTVVDALVRKLEEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALY 162          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_GEOUR3.041e-3146.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PARUW8.847e-3147.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PARD88.847e-3145.573-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPBL1.155e-3048.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPBJ1.155e-3048.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESAA1.155e-3046.453-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPIN1.509e-3048.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPIC1.509e-3048.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SYNFM2.574e-3049.683-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLAB4.391e-3042.773-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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