CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERPN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERPG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERPE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pestis GN=kdsB PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERP3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ LA+  D ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FRAP2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 67/151 (44.37%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR  S+R  GK L +I GKPMIQR +E+    +    +++ATD ++I E  + FGA VI+T +   +GT+R  EA+ KL     DIVVN+QGDEPLI  E I+   + L   P+AV ST    + + ED ++PN VK V D + YA+Y
Sbjct:    7 VIPARLKSTRLPGKMLADIAGKPMIQRVYEQVA-KSKFKSIIIATDSQEIKEVAENFGAKVILTRDDHESGTDRIAEAVTKLGFADEDIVVNVQGDEPLIPVENIEQAAQLLIEKPEAVVSTLCERITEAEDIYNPNNVKVVFDKNNYALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEHH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.945e-26
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L  + VATDDE+I    + FG  V+MT     +GT+R ++A+ +L     D+V+N+QGD+PLI+P  I+ +V   +  P   F  A   ++  D     DPN VK V DN+  A+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERAALAKGLKDIYVATDDERIKNAVEGFGGKVVMTGADAASGTDRIDDAITQLGLADDDLVINLQGDQPLIDPISIEQLVSLCERHP-GEFDMATLGVEIRDEAQINDPNHVKMVFDNNFNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BACV8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=kdsB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.945e-26
Identity = 68/157 (43.31%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP----NRVKCVVDNHGYAIY 585
            + +GIIPAR+AS+RF  KPL  + GKP+IQR +E+  ++  LD   VATDDE+I    + FG  V+MTS   ++GT+RC EA  K+ + YD+VVNIQGDEP I+   ++  VKA    P    +T V    P+D  +     N  K VV  +  A+Y
Sbjct:    2 KFIGIIPARYASTRFPAKPLAVLGGKPVIQRVYEQ--VSGILDEAYVATDDERIESAVKAFGGKVVMTSVHHKSGTDRCYEAYTKVGRGYDVVVNIQGDEPFIQKSQLE-AVKACFEDPATQIATLVKPFIPDDGLEALENVNSPKVVVGKNMNALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_YERE8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=kdsB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26
Identity = 64/152 (42.11%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPAR+AS+R  GKPL +I GKPM+    ER+ L +    ++VATD  ++    +  G +V +T    ++GTER  E +++     D I+VN+QGDEPL+ PEII  V + L A+   + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 IAIIPARYASTRLPGKPLADIAGKPMVVHVMERA-LESGASQVIVATDHPEVVTAVEAAGGEVCLTRADHQSGTERLAEVIERYGFADDQIIVNVQGDEPLVPPEIIRQVAENLAASSAGMATLAVPIESSEEAFNPNAVKVVMDAQGYALY 154          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_YERPN2.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERPG2.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERPE2.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERPB2.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERPA2.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERP32.255e-2642.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FRAP22.255e-2644.373-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEHH2.945e-2643.793-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BACV82.945e-2643.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERE83.847e-2642.113-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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