CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26
Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD----AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L  + VATDD++I +  + FG  V+MTS    +GT+R  +A+ +L  K  D+VVN+QGD+PLI+P  I+ ++   +  P     A     +T     D  DP  VK V DN   A+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTAIYVATDDDRIKDAVEGFGGKVVMTSPDAASGTDRIEDAITQLGLKDDDLVVNLQGDQPLIDPISIEQIISLFERHPGEFGMATLGFEITEKCELD--DPKHVKMVFDNEFNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FRATH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=kdsB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY-DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            +IPAR  S+R   K L +I GKPMIQR +E+    +  D +++ATD +KI +  + FGA V++T +  ++GT+R  EA+ KL   Y DIVVN+QGDEPLI  E I+   + L    +AV ST    +   ED ++PN VK V D + YA+Y
Sbjct:    7 VIPARLKSTRLPNKMLADIAGKPMIQRVYEQVT-KSKFDSIIIATDSQKIKDIAESFGAKVVLTRDDHQSGTDRIAEAVTKLGFAYEDIVVNVQGDEPLIPIENIEQAAQLLIDKSEAVVSTLCEKITDVEDIYNPNNVKVVFDKNNYALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PELPD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=kdsB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIY 585
            +  +IPARFAS RF GK L  I GKPMIQ  +ER+  A+ +D +++ATDDE+I +    FG    MT      GT+R  E    L    DI+VN+QGDEPLI PE+ID  ++ L   P    +T  + ++   D   PN VK V D  G A+Y
Sbjct:    3 ITAVIPARFASVRFPGKALAIIDGKPMIQHVYERTARASLVDSVIIATDDERIQQAVSVFGGVCRMTRNDHETGTDRLAEVAGTLSA--DIIVNVQGDEPLIAPEMIDQAIRPLLDDPSLRMATLKSRIRCLHDFLSPNVVKVVTDRDGNALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB1_THICR (3-deoxy-manno-octulosonate cytidylyltransferase 1 OS=Thiomicrospira crunogena (strain XCL-2) GN=kdsB1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 63/150 (42.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAI 582
            IIPAR+ SSR  GKPL++I GKPM++ TW ++K  +    +V+AT+ +++   C+ FGA+V +TSE   +GTER  E    L     DI+VN+QGDEPL+ P++I  V + L+  P+ + +T     L  E  FDP+ VK + D + YA+
Sbjct:    6 IIPARYESSRLLGKPLMDIQGKPMVEWTWMQAK-KSGATRVVIATESDRVKAVCESFGAEVCLTSERHESGTERIAEVASLLGLNDDDILVNVQGDEPLLPPDLIHQVAEGLETHPNTLMATLCEPILDVETVFDPHAVKVIRDCNNYAL 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB2_THICR (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Thiomicrospira crunogena (strain XCL-2) GN=kdsB2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26
Identity = 65/153 (42.48%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIY 585
            IPAR+ SSR  GKPL  I GKPMIQ  +ER   AT ++ + VATDD++I E  ++FG +V+MT     +GT+R  +A Q L+ K+ D++VN+QGD+PL+    I+ V+   +AA  D  F  +  S K     +   P  VK V D +G+A+Y
Sbjct:    7 IPARYGSSRLPGKPLKLINGKPMIQHVFERISKATGIEAVYVATDDDRIKEVVEKFGGNVVMTPPEAESGTDRIAQAAQALDLKEDDLIVNVQGDQPLVNQGSIEAVIAPFKAADYDGSFEMSTLSFKIVNEAEITSPKDVKLVTDVNGFALY 159          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_THISH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=kdsB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26
Identity = 67/150 (44.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            IPAR+AS+R  GKPL+ + GKPMIQ   ER+ LA   + +V+ATDD +I++  + FGA V++T     +G++R  E   +L  +  DIVVN+QGDEPL  P+I+  V +AL+   DA  +T  T ++  E   DPN VK V D   YA+Y
Sbjct:    7 IPARYASTRLPGKPLLMLGGKPMIQHVHERA-LACGAEEVVIATDDTRISDVAEGFGARVVLTDAHHESGSDRIAEVATELGWRDDDIVVNLQGDEPLTPPDILHQVAEALERHTDAAMATLCTPIETVEQMLDPNVVKVVRDAADYALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEFS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 582
            +IP+R+AS+R  GKPL  I  KPMIQ  WE++   ++ + +VVATDD +I E CQ FGA+ ++T E   +GT+R  E   KL    D IVVN+QGDEPLI P +ID V   L A  +A  +T    ++     F+PN VK V D +G A+
Sbjct:    8 VIPSRYASTRLPGKPLQLIGDKPMIQLVWEQA-CKSSAERVVVATDDPRIIEACQGFGAEAVLTREDHNSGTDRLAEVATKLGLAPDAIVVNVQGDEPLIPPSVIDQVAANLAAHGEARMATLAEPIEDIATLFNPNVVKVVSDINGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ENT38 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Enterobacter sp. (strain 638) GN=kdsB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26
Identity = 68/152 (44.74%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARFAS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRVIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAAIIRQVAENLAQRQVGMATLAVPIHHAEEAFNPNAVKVVMDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHIDS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEHT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKAL--QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V +IPAR+ASSR  GKPL +I GKPMIQ  +E++ L+     +V+ATD +K+ +    F +DV+MT E  ++GTER  E +  L+   + IVVN+QGDEPL+ PE +  V   L    AP A  S A+   + ED F+PN VK V D +  A+Y
Sbjct:    4 VVVIPARYASSRLPGKPLADICGKPMIQHVYEKACLSGA-SKVVIATDHQKVFDAVSTFTSDVLMTREDHQSGTERLAEVVDLLKLDNNTIVVNVQGDEPLLAPENVSQVATLLNESTAPMATLSVAIE--EQEDVFNPNAVKVVSDINKNALY 154          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_SHESH3.847e-2643.513-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FRATH3.847e-2643.713-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PELPD5.024e-2643.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB1_THICR5.024e-2642.003-deoxy-manno-octulosonate cytidylyltransferase 1 ... [more]
KDSB2_THICR6.561e-2642.483-deoxy-manno-octulosonate cytidylyltransferase 2 ... [more]
KDSB_THISH8.569e-2644.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEFS8.569e-2645.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ENT388.569e-2644.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHIDS1.462e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEHT1.462e-2544.813-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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