CX300513
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=kdsB PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26 Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD----AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L + VATDD++I + + FG V+MTS +GT+R +A+ +L K D+VVN+QGD+PLI+P I+ ++ + P A +T D DP VK V DN A+Y Sbjct: 6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTAIYVATDDDRIKDAVEGFGGKVVMTSPDAASGTDRIEDAITQLGLKDDDLVVNLQGDQPLIDPISIEQIISLFERHPGEFGMATLGFEITEKCELD--DPKHVKMVFDNEFNALY 157
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FRATH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=kdsB PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26 Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY-DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585 +IPAR S+R K L +I GKPMIQR +E+ + D +++ATD +KI + + FGA V++T + ++GT+R EA+ KL Y DIVVN+QGDEPLI E I+ + L +AV ST + ED ++PN VK V D + YA+Y Sbjct: 7 VIPARLKSTRLPNKMLADIAGKPMIQRVYEQVT-KSKFDSIIIATDSQKIKDIAESFGAKVVLTRDDHQSGTDRIAEAVTKLGFAYEDIVVNVQGDEPLIPIENIEQAAQLLIDKSEAVVSTLCEKITDVEDIYNPNNVKVVFDKNNYALY 156
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PELPD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=kdsB PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26 Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = 1 Query: 130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIY 585 + +IPARFAS RF GK L I GKPMIQ +ER+ A+ +D +++ATDDE+I + FG MT GT+R E L DI+VN+QGDEPLI PE+ID ++ L P +T + ++ D PN VK V D G A+Y Sbjct: 3 ITAVIPARFASVRFPGKALAIIDGKPMIQHVYERTARASLVDSVIIATDDERIQQAVSVFGGVCRMTRNDHETGTDRLAEVAGTLSA--DIIVNVQGDEPLIAPEMIDQAIRPLLDDPSLRMATLKSRIRCLHDFLSPNVVKVVTDRDGNALY 153
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB1_THICR (3-deoxy-manno-octulosonate cytidylyltransferase 1 OS=Thiomicrospira crunogena (strain XCL-2) GN=kdsB1 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26 Identity = 63/150 (42.00%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAI 582 IIPAR+ SSR GKPL++I GKPM++ TW ++K + +V+AT+ +++ C+ FGA+V +TSE +GTER E L DI+VN+QGDEPL+ P++I V + L+ P+ + +T L E FDP+ VK + D + YA+ Sbjct: 6 IIPARYESSRLLGKPLMDIQGKPMVEWTWMQAK-KSGATRVVIATESDRVKAVCESFGAEVCLTSERHESGTERIAEVASLLGLNDDDILVNVQGDEPLLPPDLIHQVAEGLETHPNTLMATLCEPILDVETVFDPHAVKVIRDCNNYAL 154
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB2_THICR (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Thiomicrospira crunogena (strain XCL-2) GN=kdsB2 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26 Identity = 65/153 (42.48%), Postives = 94/153 (61.44%), Query Frame = 1 Query: 142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIY 585 IPAR+ SSR GKPL I GKPMIQ +ER AT ++ + VATDD++I E ++FG +V+MT +GT+R +A Q L+ K+ D++VN+QGD+PL+ I+ V+ +AA D F + S K + P VK V D +G+A+Y Sbjct: 7 IPARYGSSRLPGKPLKLINGKPMIQHVFERISKATGIEAVYVATDDDRIKEVVEKFGGNVVMTPPEAESGTDRIAQAAQALDLKEDDLIVNVQGDQPLVNQGSIEAVIAPFKAADYDGSFEMSTLSFKIVNEAEITSPKDVKLVTDVNGFALY 159
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_THISH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=kdsB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26 Identity = 67/150 (44.67%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585 IPAR+AS+R GKPL+ + GKPMIQ ER+ LA + +V+ATDD +I++ + FGA V++T +G++R E +L + DIVVN+QGDEPL P+I+ V +AL+ DA +T T ++ E DPN VK V D YA+Y Sbjct: 7 IPARYASTRLPGKPLLMLGGKPMIQHVHERA-LACGAEEVVIATDDTRISDVAEGFGARVVLTDAHHESGSDRIAEVATELGWRDDDIVVNLQGDEPLTPPDILHQVAEALERHTDAAMATLCTPIETVEQMLDPNVVKVVRDAADYALY 155
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEFS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=kdsB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26 Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 582 +IP+R+AS+R GKPL I KPMIQ WE++ ++ + +VVATDD +I E CQ FGA+ ++T E +GT+R E KL D IVVN+QGDEPLI P +ID V L A +A +T ++ F+PN VK V D +G A+ Sbjct: 8 VIPSRYASTRLPGKPLQLIGDKPMIQLVWEQA-CKSSAERVVVATDDPRIIEACQGFGAEAVLTREDHNSGTDRLAEVATKLGLAPDAIVVNVQGDEPLIPPSVIDQVAANLAAHGEARMATLAEPIEDIATLFNPNVVKVVSDINGLAL 156
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ENT38 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Enterobacter sp. (strain 638) GN=kdsB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.569e-26 Identity = 68/152 (44.74%), Postives = 93/152 (61.18%), Query Frame = 1 Query: 133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 V IIPARFAS+R GKPLV+I GKPMI ER++ + D ++VATD E +A + G +V MT ++GTER E ++K D ++VN+QGDEP+I II V + L + + AV E+AF+PN VK V+D GYA+Y Sbjct: 4 VVIIPARFASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRVIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAAIIRQVAENLAQRQVGMATLAVPIHHAEEAFNPNAVKVVMDAEGYALY 154
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHIDS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=kdsB PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25 Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1 Query: 133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 V IIPAR+AS+R GKPLV+I GKPMI ER++ + D ++VATD E +A + G +V MT ++GTER E ++K D ++VN+QGDEP+I II V L + + AV E+AF+PN VK V+D GYA+Y Sbjct: 4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEHT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=kdsB PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25 Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 1 Query: 133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKAL--QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 V +IPAR+ASSR GKPL +I GKPMIQ +E++ L+ +V+ATD +K+ + F +DV+MT E ++GTER E + L+ + IVVN+QGDEPL+ PE + V L AP A S A+ + ED F+PN VK V D + A+Y Sbjct: 4 VVVIPARYASSRLPGKPLADICGKPMIQHVYEKACLSGA-SKVVIATDHQKVFDAVSTFTSDVLMTREDHQSGTERLAEVVDLLKLDNNTIVVNVQGDEPLLAPENVSQVATLLNESTAPMATLSVAIE--EQEDVFNPNAVKVVSDINKNALY 154 The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 397
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bpback to top |