CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECOSE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain SE11) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECO8A (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O8 (strain IAI1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECO55 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECO24 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KPSU5_ECOLX (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli GN=kpsU PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P  ++ +++ ++  P    +T   ++   +A +P+ VK VV+    A+Y
Sbjct:    2 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_TOLAT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 68/152 (44.74%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V +IPAR+ SSR  GKPL +I GKPMI    ER+K A     ++VA DDE++A      G DV MT    ++GTER  E  +K     D I+VN+QGDEPLI P II  V   L      + + AV      + F+PN VK V+D  GYA+Y
Sbjct:    4 VVVIPARYQSSRLPGKPLADIHGKPMIAWVVERAKQAGA-SQVIVAVDDERVAAAVSALGVDVCMTGSHHQSGTERLAEVCEKYAFAPDTIIVNVQGDEPLIPPAIITQVADNLANTSAPMATLAVAIEDEHELFNPNAVKVVMDKQGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HALHL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 61/151 (40.40%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIY 585
            +IPAR+ +SR  GKPL ++LG+P++Q  + R+ + +    +VVATDD +I   C+ FGA+V++T+     GT+R  E + +L    + IVVN+QGDEPL+ PE++  V + L   PDA  +T  T +   D  F+P+ VK V D+  +A+Y
Sbjct:    9 VIPARYGASRLPGKPLADLLGEPVVQHVYRRA-VESGAARVVVATDDARIESACRDFGAEVLLTAPDHPTGTDRIAEVVDRLALVDEAIVVNLQGDEPLMPPELVALVAERLDTDPDAAIATLATPVTAADELFEPSVVKVVRDHRDHALY 158          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAEDU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus ducreyi GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR  GKPL++I G PMIQ  W++++ A   + +++ATD  +I    + FGA+V MTS+  ++GTER  E + K+     +I+VN+QGDEPLI P I+  V   L      + + AV     E+ F+PN VK V+++ G A+Y
Sbjct:    6 IIPARYASSRLPGKPLLDINGYPMIQYVWQKAQQAGA-NRVIIATDHPQIQTVAKAFGAEVCMTSDQHQSGTERLAEVVAKMAIADQEIIVNVQGDEPLIPPIIVQQVATNLDKNGVNMATLAVKLTTREELFNPNVVKTVINDKGMALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIY 585
            IIPAR  S+R   K L +I G+P+I RTW ++        +VVATD  KIAE    +GA+V+MTS   R G+ER  EA ++     D+VVN+QGDEPLI  E ID  ++   +      ST V  L+P+D     DPN+VK V++  GYA+Y
Sbjct:    6 IIPARLGSTRLPEKMLADIEGEPLIVRTWRQAMQCCRASRVVVATDSVKIAEVLTTYGAEVVMTSPEARCGSERIAEAARQF--ACDVVVNLQGDEPLISHETIDLALEPFFSPNPPDCSTLVFPLQPDDWAQLHDPNQVKVVLNREGYALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FRATW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.493e-25
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            +IPAR  S+R   K L +I GKPMIQR +E+    +  D +++ATD +KI +  + FGA V++T +  ++GT+R  EA+ KL     DIVVN+QGDEPLI  E I+   + L    +AV ST    +   ED ++PN VK V D + YA+Y
Sbjct:    7 VIPARLKSTRLPNKMLADIAGKPMIQRVYEQVT-KSKFDSIIIATDSQKIKDIAESFGAKVVLTRDDHQSGTDRIAEAVTKLGFADEDIVVNVQGDEPLIPIENIEQAAQLLIDKSEAVVSTLCEKITDVEDIYNPNNVKVVFDKNNYALY 156          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_ECOSE1.462e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO8A1.462e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO551.462e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO241.462e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KPSU5_ECOLX1.909e-2538.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_TOLAT1.909e-2544.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HALHL1.909e-2540.403-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEDU1.909e-2542.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLCH1.909e-2544.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FRATW2.493e-2543.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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