CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SALG2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARF+S+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFSSTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SALEP (3-deoxy-manno-octulosonate cytidylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARF+S+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFSSTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SALCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Salmonella choleraesuis GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARF+S+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFSSTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SALA4 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Salmonella agona (strain SL483) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARF+S+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFSSTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PROMH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Proteus mirabilis (strain HI4320) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 64/150 (42.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP R+AS+R  GKPL +I GKPMI R  E++K +     ++VATD+  +    +Q G +  MT E   +GTER  E ++K +   D I+VN+QGDEPLI P II  V + L      + + AV  +  ++AF+PN VK V+D  G+A+Y
Sbjct:    5 IIPGRYASTRLPGKPLADIHGKPMIVRVMEQAKRSGA-KRVIVATDNLDVVRAVEQAGGEACMTREDHHSGTERLAEVIEKYQFADDEIIVNVQGDEPLIPPAIITQVAENLANCGAGMATLAVPIVDSKEAFNPNAVKVVMDAKGFALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECOLI (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12) GN=kdsB PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECOLC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECOHS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECODH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ECOBW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALY 154          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_SALG24.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SALEP4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SALCH4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SALA44.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PROMH4.253e-2542.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOLI4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOLC4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOHS4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECODH4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOBW4.253e-2543.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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