CX300513
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain FRC-32) GN=kdsB PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 7.490e-30 Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 1 Query: 127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585 ++ IIPAR+AS+RFEGK L I GKPM+Q +ER+ A+ + ++VATDDE+I + FG MTS S GT+R E +L+ DI+VN+QGDEPLI+P +ID + L + T T +K D PN VK V D GYA+Y Sbjct: 2 KITAIIPARYASTRFEGKALAQIQGKPMVQHVYERTLKASLVSEVIVATDDERIVAAVRAFGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDEPLIDPAMIDEAISPLAEDSSLLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALY 153
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PELCD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29 Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = 1 Query: 130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIY 585 + +IPAR+ASSRF GKPL ILGK MIQR +ER+ A +D +VVATDD +IA+ FG +V MT GT+R E +++ + ++VN+QGDEPLI+P +I+ V L P T T L ++ DPN VK V D G+A+Y Sbjct: 3 ITAVIPARYASSRFPGKPLARILGKTMIQRVYERTAQAACIDRVVVATDDSRIADVVSGFGGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLIDPHMIEAAVAPLSEDPAIPMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALY 153
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp. (strain W3-18-1) GN=kdsB PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29 Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1 Query: 130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + FG V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P + + + D DP +VK V DN+ YA+Y Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGFGGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQPGEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALY 157
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEPC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=kdsB PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29 Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1 Query: 130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + FG V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P + + + D DP +VK V DN+ YA+Y Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGFGGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQPGEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALY 157
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas putida (strain GB-1) GN=kdsB PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29 Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAI 582 +IPAR S+R GKPL+ I GKPM+Q WE+++ + +V+ATDD I E CQ FGA+V+MT +GT+R E + L D IVVN+QGDEPLI P IID V L A P+A +T + +PE F+PN VK V D +G A+ Sbjct: 8 VIPARLRSTRLPGKPLLPIAGKPMVQHVWEQARRSGA-SRVVIATDDASILEACQAFGAEVLMTRADHESGTDRLAEVVAHLGLPADAIVVNVQGDEPLIPPVIIDQVAANLAAHPEAGIATLAEPIHEPETVFNPNAVKVVSDKNGLAL 156
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain M21) GN=kdsB PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29 Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 1 Query: 127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585 ++ +IPAR+AS+RFEGK L +I+G+PM+Q +ER+ AT + ++VATDDE+IA + FG V MTS + GT+R E K++ DIVVN+QGDEPLI+P +ID ++ L P +T +K D PN VK V D G +Y Sbjct: 2 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRAFGGRVEMTSPTHETGTDRLAEVAAKIDA--DIVVNVQGDEPLIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLY 153
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio parahaemolyticus GN=kdsB PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.846e-29 Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIY 585 +IPAR++SSR GKPL +I GKPM+Q +E++ A D +++ATDDE+++ +QFG V MTS + +GTER E ++K+ D I+VN+QGDEPL+ P II V L AA DA +T ++ ED F+PN VK V D GYA+Y Sbjct: 6 VIPARYSSSRLPGKPLADIGGKPMVQWVYEQAMQAGA-DDVIIATDDERVSAAVEQFGGKVCMTSPNHESGTERLAEVVEKMAIPADHIIVNVQGDEPLVPPVIIRQVADNL-AASDAPMATLAVEIESEDEVFNPNAVKVVADERGYAMY 154
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSE14 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=kdsB PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.846e-29 Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582 +IPAR+ SSRF GKPL I GKPM+Q WE++ ++ + +V+ATDD +I E CQ FGA+V++T E +GT+R E +L D IVVN+QGDEP+I P +ID V L A P+A ST + A F+PN VK D +G A+ Sbjct: 8 VIPARYGSSRFPGKPLKTIAGKPMVQLVWEQA-CKSSAERVVIATDDARIVEACQAFGAEVLLTREDHNSGTDRLAEVAAQLGLAADAIVVNVQGDEPMIPPAVIDQVASNLAAHPEAGMSTLAEPIDDVAALFNPNIVKVATDINGLAL 156
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SODGM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Sodalis glossinidius (strain morsitans) GN=kdsB PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29 Identity = 70/152 (46.05%), Postives = 97/152 (63.82%), Query Frame = 1 Query: 133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585 + IIPARFASSR GKPL +I GKPM+ R ER++ A+ D ++VATD + + E ++ G +V +T ++GTER E + + + D I+VN+QGDEPLI P+II V L A + + AV E+AF+PN VK VVD GYA+Y Sbjct: 4 IAIIPARFASSRLPGKPLADINGKPMVVRVMERAQ-ASGADRVIVATDHQGVVEAVERAGGEVYLTRPDHQSGTERLQEVIDRYDFPDDRIIVNVQGDEPLIPPQIILQVADNLAGAEAGMATLAVPITTAEEAFNPNAVKVVVDARGYALY 154
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=kdsB PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29 Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 1 Query: 139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 582 +IP+R+AS+R GKPL++I GKPMIQ WE++ ++ +VVATDD +I E C+ FGA+V++T E +GT+R E KL + D IVVN+QGDEPLI P +ID V L A +A +T ++ E F+PN VK V D +G A+ Sbjct: 8 VIPSRYASTRLPGKPLLDIAGKPMIQHVWEQAS-KSSASRVVVATDDARIVEACKAFGAEVVLTREDHNSGTDRLAEVAAKLGLEPDAIVVNVQGDEPLIPPSVIDQVAANLAAHTEARMATLAEPIEDVETLFNPNVVKVVSDLNGLAL 156 The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 397
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bpback to top |