CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain FRC-32) GN=kdsB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.490e-30
Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            ++  IIPAR+AS+RFEGK L  I GKPM+Q  +ER+  A+ +  ++VATDDE+I    + FG    MTS S   GT+R  E   +L+   DI+VN+QGDEPLI+P +ID  +  L      +  T  T +K   D   PN VK V D  GYA+Y
Sbjct:    2 KITAIIPARYASTRFEGKALAQIQGKPMVQHVYERTLKASLVSEVIVATDDERIVAAVRAFGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDEPLIDPAMIDEAISPLAEDSSLLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PELCD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29
Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIY 585
            +  +IPAR+ASSRF GKPL  ILGK MIQR +ER+  A  +D +VVATDD +IA+    FG +V MT      GT+R  E   +++ +  ++VN+QGDEPLI+P +I+  V  L   P     T  T  L  ++  DPN VK V D  G+A+Y
Sbjct:    3 ITAVIPARYASSRFPGKPLARILGKTMIQRVYERTAQAACIDRVVVATDDSRIADVVSGFGGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLIDPHMIEAAVAPLSEDPAIPMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp. (strain W3-18-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V+ +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R NEA++ L  K  D+V+N+QGD+PLI+P  I+ ++   +  P    + +     +   D  DP +VK V DN+ YA+Y
Sbjct:    3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGFGGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQPGEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEPC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V+ +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R NEA++ L  K  D+V+N+QGD+PLI+P  I+ ++   +  P    + +     +   D  DP +VK V DN+ YA+Y
Sbjct:    3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGFGGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQPGEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas putida (strain GB-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAI 582
            +IPAR  S+R  GKPL+ I GKPM+Q  WE+++ +     +V+ATDD  I E CQ FGA+V+MT     +GT+R  E +  L    D IVVN+QGDEPLI P IID V   L A P+A  +T    + +PE  F+PN VK V D +G A+
Sbjct:    8 VIPARLRSTRLPGKPLLPIAGKPMVQHVWEQARRSGA-SRVVIATDDASILEACQAFGAEVLMTRADHESGTDRLAEVVAHLGLPADAIVVNVQGDEPLIPPVIIDQVAANLAAHPEAGIATLAEPIHEPETVFNPNAVKVVSDKNGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain M21) GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            ++  +IPAR+AS+RFEGK L +I+G+PM+Q  +ER+  AT +  ++VATDDE+IA   + FG  V MTS +   GT+R  E   K++   DIVVN+QGDEPLI+P +ID  ++ L   P    +T    +K   D   PN VK V D  G  +Y
Sbjct:    2 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRAFGGRVEMTSPTHETGTDRLAEVAAKIDA--DIVVNVQGDEPLIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio parahaemolyticus GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.846e-29
Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIY 585
            +IPAR++SSR  GKPL +I GKPM+Q  +E++  A   D +++ATDDE+++   +QFG  V MTS +  +GTER  E ++K+    D I+VN+QGDEPL+ P II  V   L AA DA  +T    ++ ED  F+PN VK V D  GYA+Y
Sbjct:    6 VIPARYSSSRLPGKPLADIGGKPMVQWVYEQAMQAGA-DDVIIATDDERVSAAVEQFGGKVCMTSPNHESGTERLAEVVEKMAIPADHIIVNVQGDEPLVPPVIIRQVADNL-AASDAPMATLAVEIESEDEVFNPNAVKVVADERGYAMY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSE14 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=kdsB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.846e-29
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+ SSRF GKPL  I GKPM+Q  WE++   ++ + +V+ATDD +I E CQ FGA+V++T E   +GT+R  E   +L    D IVVN+QGDEP+I P +ID V   L A P+A  ST    +    A F+PN VK   D +G A+
Sbjct:    8 VIPARYGSSRFPGKPLKTIAGKPMVQLVWEQA-CKSSAERVVIATDDARIVEACQAFGAEVLLTREDHNSGTDRLAEVAAQLGLAADAIVVNVQGDEPMIPPAVIDQVASNLAAHPEAGMSTLAEPIDDVAALFNPNIVKVATDINGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SODGM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Sodalis glossinidius (strain morsitans) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 70/152 (46.05%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            + IIPARFASSR  GKPL +I GKPM+ R  ER++ A+  D ++VATD + + E  ++ G +V +T    ++GTER  E + + +   D I+VN+QGDEPLI P+II  V   L  A   + + AV     E+AF+PN VK VVD  GYA+Y
Sbjct:    4 IAIIPARFASSRLPGKPLADINGKPMVVRVMERAQ-ASGADRVIVATDHQGVVEAVERAGGEVYLTRPDHQSGTERLQEVIDRYDFPDDRIIVNVQGDEPLIPPQIILQVADNLAGAEAGMATLAVPITTAEEAFNPNAVKVVVDARGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 582
            +IP+R+AS+R  GKPL++I GKPMIQ  WE++   ++   +VVATDD +I E C+ FGA+V++T E   +GT+R  E   KL  + D IVVN+QGDEPLI P +ID V   L A  +A  +T    ++  E  F+PN VK V D +G A+
Sbjct:    8 VIPSRYASTRLPGKPLLDIAGKPMIQHVWEQAS-KSSASRVVVATDDARIVEACKAFGAEVVLTREDHNSGTDRLAEVAAKLGLEPDAIVVNVQGDEPLIPPSVIDQVAANLAAHTEARMATLAEPIEDVETLFNPNVVKVVSDLNGLAL 156          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_GEOSF7.490e-3044.813-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PELCD1.278e-2945.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHESW2.179e-2944.523-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEPC2.179e-2944.523-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEPG2.179e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSM2.179e-2944.163-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBPA2.846e-2947.023-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSE142.846e-2946.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SODGM3.717e-2946.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEPF3.717e-2946.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
back to top