CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEMY (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL +I GKPM+Q  WE++K  ++   +VVATDD +I E C+ FGA+V++T E   +GT+R  E   +L    D IVVN+QGDEPL+ P IID V   L   P A  +T    ++   A F+PN VK V D  G A+
Sbjct:    8 VIPARYASTRLPGKPLQDIAGKPMVQHVWEQAK-KSSASRVVVATDDARIVEACKVFGAEVLLTREDHNSGTDRLAEVATQLGLPADAIVVNVQGDEPLVPPSIIDQVAANLATNPQAGIATLAEPIEDVTALFNPNVVKVVADKSGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOMG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 68/154 (44.16%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            ++  IIPAR+AS+RF GK L  I+GKPM+Q  +ER+  A  +  ++VATDDE++AE  + FG  V MTS +   GT+R  E   +++   DI+VN+QGDEPLIEP +ID  +  L A       T  + +K   D   PN VK V D  G A+Y
Sbjct:    2 KITAIIPARYASTRFPGKALAEIIGKPMVQHVYERTAKAGLVSEVIVATDDERVAEAVRAFGGRVEMTSATHETGTDRLAEVAARIDA--DIIVNVQGDEPLIEPAMIDEAIAPLVADASIRMGTLKSRIKSLHDFLSPNVVKVVTDREGDALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_DESOH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIY 585
            ++  IIP+R+ S+RF GKPL  I G PMIQR +++ K A  +  + VATDD +I E   +FG + +MTS +CR+GT+R  EA +++     DIVVNIQGD+PLI P+ ID  +  L + PD   +TA  + +  ++  +P  VK V D  G+A+Y
Sbjct:    2 KIAAIIPSRYGSTRFAGKPLAPIAGIPMIQRVYDQVKQAICVTDIAVATDDRRIVEAVTRFGGNALMTSAACRSGTDRAAEAAKQMGLAPEDIVVNIQGDQPLIAPQTIDETLAPLLSDPDLGMTTAAFAIMDKQEITNPKDVKMVFDADGFALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri (strain MJ11) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDD +I    + FG DV MTS +  +GTER  E ++K     D IVVN+QGDEPLI P II  V + L  +   + + AVT  + +D F+PN VK V D  GYA+Y
Sbjct:    6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBF1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDD +I    + FG DV MTS +  +GTER  E ++K     D IVVN+QGDEPLI P II  V + L  +   + + AVT  + +D F+PN VK V D  GYA+Y
Sbjct:    6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_THEYD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 67/155 (43.23%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQK-LEKKYD-----IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+RF GKPL  +  KP+IQ  +ER+K +  +D + VATDD +I    + FG   IMTS    +GT+R  EA+ K L++ Y+     IV+N+QGDEPLI+ E+ID ++  ++   D++ + A    K +D F+PN VK V D +GYA+Y
Sbjct:    6 VIPARYGSTRFPGKPLAFLKNKPIIQHVYERAKSSKMIDEVFVATDDSRILHTVESFGGKAIMTSSKHPSGTDRIAEAVDKLLQEGYNLQESSIVINLQGDEPLIKKEMIDQLIDLMKNENDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALY 160          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas putida (strain W619) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 71/150 (47.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAI 582
            +IPAR  S+R  GKPL+ I GKPM+Q  WE+++ +     +V+ATDD  I E CQ FGA+V+MT     +GT+R  E   +L    D IVVN+QGDEPLI P IID V   L A P+A  +T    +  PE  F+PN VK V D +G A+
Sbjct:    8 VIPARLRSTRLPGKPLLLIAGKPMVQHVWEQARKSGA-GRVVIATDDASIVEACQAFGAEVLMTRADHESGTDRLAEVAAQLGLPADAIVVNVQGDEPLIPPVIIDQVAANLAAHPEAGIATLAEPIHDPETVFNPNAVKVVSDKNGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEU2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+ SSRF GKPL  I GKPM+Q  WE++   ++ + +V+ATDD +I E CQ FGA+V++T +   +GT+R  E   +L    D IVVN+QGDEP+I P +ID V   L A P+A  ST    +    A F+PN VK   D +G A+
Sbjct:    8 VIPARYGSSRFPGKPLKTIAGKPMVQLVWEQA-CKSSAERVVIATDDARIVEACQAFGAEVLLTRDDHNSGTDRLAEVAAQLGLAADAIVVNVQGDEPMIPPAVIDQVASNLAAHPEAGMSTLAEPIDDVAALFNPNIVKVATDINGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOBB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            ++  +IPAR+AS+RFEGK L +I+G+PM+Q  +ER+  AT +  ++VATDDE+IA   + FG  V MTS +   GT+R  E   +++   DI+VN+QGDEPLI+P +ID  ++ L   P    +T    +K   D   PN VK V D  G  +Y
Sbjct:    2 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRAFGGRVEMTSPTHETGTDRLAEVAARIDA--DIIVNVQGDEPLIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ALISL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDD +I    + FG DV MTS +  +GTER  E + K      +IVVN+QGDEPLI P II  V K L  +   + + AVT  + ED F+PN VK V D  GYA+Y
Sbjct:    6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIDKCGIASNEIVVNVQGDEPLIPPSIIRQVAKNLADSIAPMATLAVTIDEEEDVFNPNAVKVVTDAEGYALY 154          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_PSEMY3.717e-2946.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOMG3.717e-2944.163-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESOH3.717e-2943.233-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBFM4.855e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBF14.855e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_THEYD4.855e-2943.233-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEPW4.855e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEU26.340e-2946.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOBB6.340e-2942.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ALISL6.340e-2948.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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