CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FLAJ1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA--VTSLKPEDAF-DPNRVKCVVDNHGYAIY 585
            +++ +IPAR+AS+RF  K + ++ GK +I RT+E +      D + V TD + I +     G   IM+ +   +G++R  EA+  L+   DIVVN+QGDEP  E   ++ V+   +  PD     A  +  +  ED   +PN VK VVD   +A+Y
Sbjct:    2 KIIAVIPARYASTRFPAKLMQDLGGKTVILRTYEAAVSTKLFDDVFVVTDSDLIFDEIVSNGGKAIMSIKEHESGSDRIAEAVANLD--VDIVVNVQGDEPFTEAGPLEQVLSVFKNDPDKKIDLASLMREITNEDEINNPNNVKVVVDQSQFALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB2_BURS3 (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Burkholderia sp. (strain 383) GN=kdsB2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY--DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPLV++ G+PMI R   R   A     +VVA DD +IA      G    MT     +GT+R  E L ++   +  D+V+N+QGDEPL+   ++        AAPD   +T    +      D P  VK VVD  G A+Y
Sbjct:   13 VIPARYGSTRLPGKPLVDLAGEPMIARVHARVSRALPGADIVVAIDDARIAAALDARGIRFAMTGAHHASGTDRAAE-LARVSGWHDTDVVLNVQGDEPLVPEALLKAFADFCVAAPDLGIATVACPVGDAALLDEPGIVKLVVDRRGRALY 163          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPARF++SR  GKPL  + G+P+I R  ER+ L+T    + VATDD +IAE      G  V MT+ +  +G++R  E  +      ++ VVN+QGDEP      I  V   L  +   + + A T  K ED F+PN VK V + HG A+Y
Sbjct:    7 IPARFSASRLPGKPLRLLGGRPLIHRVAERA-LSTGAREVWVATDDVRIAEAVASLDGVHVAMTANTHLSGSDRLAECARIAGWDPEVCVVNLQGDEPFAPAAGIRAVAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNTHGEALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XYLF2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain M23) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPARF++SR  GKPL  + G+P+I R  ER+ L+T    + VATDD +IAE      G  V MT+ +  +G++R  E  +      ++ VVN+QGDEP      I  V   L  +   + + A T  K ED F+PN VK V + HG A+Y
Sbjct:   12 IPARFSASRLPGKPLRLLGGRPLIHRVAERA-LSTGAREVWVATDDVRIAEAVASLDGVHVAMTANTHLSGSDRLAECARIAGWDPEVCVVNLQGDEPFAPAAGIRAVAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNTHGEALY 160          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHOPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhodopseudomonas palustris GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +IPAR A++R  GKPL++I G PM+ +   R++ A  +  + VATD  +IA      G +V+MT     +G++R  EALQ L+  +K + V+N+QGD P I PE I  V++ L      + + A      E+A +PN VK +
Sbjct:    9 LIPARMAATRLPGKPLLDIAGLPMVVQVLRRAQ-AAEIGRVAVATDAPEIAAAVTAHGGEVVMTRADHPSGSDRIFEALQTLDPDRKIETVINLQGDFPTIRPEQIGAVLEPLADPAVDIATLAAEIHTEEEATNPNVVKVI 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACIC5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V+G+IPAR  S+R   K L  I G+PM+   +  ++ +  L  +++ATD E++ E  +Q G   I T E C +GT+R     Q ++   DI VNIQGDEP++ P     ++   +  P    +T       ++  +PN VK V    G A+Y
Sbjct:    6 VLGVIPARIGSTRLPRKVLREIAGEPMLAWVYRAARASGQLRQVLIATDAEEVMEFARQKGLPAIFTPEDCASGTDRVFVVAQSIDA--DIYVNIQGDEPMLTPAHFTALLAPFE-QPHVQVTTLSVPCSEDEIANPNAVKVVTAADGRALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB2_BURCM (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=kdsB2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPLV++ G+PMI R   R + A     +VVA DD +IAE     G    MT     +GT+R  E  +       D V+N+QGDEPL+   ++        AAPD   +T    +      D P  VK VVD+ G A+Y
Sbjct:   13 VIPARYGSTRLPGKPLVDLDGEPMIVRVHARVRRALPDADIVVAIDDARIAEVLDARGIRFAMTDTGHASGTDRAAEVARVSGWPDTDAVLNVQGDEPLVPTALLQAFAGFCGAAPDLGVATVACPIDEVALLDEPAIVKVVVDHRGRALY 163          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHILW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.499e-17
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            V+ +IPAR AS+R  GKPL +I G PMI +   R++ A  +  +VVA DD ++ +     G +V+MTS   ++G++R  EALQK++   K + +VN+QGD P I+PE +   ++ L+     + +        ED   P+ VK V
Sbjct:    9 VLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAQEAA-IGRVVVAVDDIRVFDAVSAAGFEVVMTSSDHQSGSDRIFEALQKVDPAGKAEFIVNVQGDLPTIDPETVRAALRPLENEAVDIGTLTTEIDNEEDKTAPHIVKVV 152          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_NITHX (3-deoxy-manno-octulosonate cytidylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  121 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            ++R + +IPAR A++R  GKPL++I G PM+     R++ A  +  + VATD  +IA      G + IMT     +G++R  EAL +L+   + + ++N+QGD P I P+II  V+K L      + + A      E+A +PN VK V
Sbjct:    3 KTRTLVLIPARMAATRLPGKPLLDIGGLPMVVHVLRRAETAG-IGRVAVATDTPEIAAAVTAHGGEAIMTRADHPSGSDRVFEALDRLDPDGRIETIINLQGDFPTIRPDIIRDVLKPLADPAVDIATLAAEIHSDEEATNPNVVKAV 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BRUSU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella suis GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            + + +IP R  S+R   KPL +I GKPMI    +R+  A  L   V+ATD E+I +     G + IMT     +G++R  EAL KL+   + D VVN+QGD P I+P+ I   +  L+  P  + +  V     E+  +PN VK V
Sbjct:    6 KTLTLIPTRLGSTRLPNKPLADICGKPMIVHVADRAA-AAKLGRTVIATDSEEIFKVVAAHGHEAIMTRGDHESGSDRIYEALAKLDPSGEIDAVVNVQGDLPTIDPDTIRRALLPLEDGPADIATLGVEITVEEEKTNPNVVKIV 150          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_FLAJ11.465e-1734.623-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB2_BURS31.465e-1737.503-deoxy-manno-octulosonate cytidylyltransferase 2 ... [more]
KDSB_XYLFT1.913e-1740.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XYLF21.913e-1740.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHOPA1.913e-1737.323-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACIC51.913e-1733.553-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB2_BURCM1.913e-1737.753-deoxy-manno-octulosonate cytidylyltransferase 2 ... [more]
KDSB_RHILW2.499e-1736.553-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_NITHX3.264e-1735.813-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BRUSU3.264e-1736.993-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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