CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BRUC2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            + + +IP R  S+R   KPL +I GKPMI    +R+  A  L   V+ATD E+I +     G + IMT     +G++R  EAL KL+   + D VVN+QGD P I+P+ I   +  L+  P  + +  V     E+  +PN VK V
Sbjct:    6 KTLTLIPTRLGSTRLPNKPLADICGKPMIVHVADRAA-AAKLGRTVIATDSEEIFKVVAAHGHEAIMTRGDHESGSDRIYEALAKLDPSGEIDAVVNVQGDLPTIDPDTIRRALLPLEDGPADIATLGVEITVEEEKTNPNVVKIV 150          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHOPT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 53/142 (37.32%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +IPAR A++R  GKPL++I G PM+ +   R++ A  +  + VATD  +IA      G +V+MT     +G++R  EALQ L  ++K + V+N+QGD P I PE I  V+  L      + + A      E+A +PN VK +
Sbjct:    9 LIPARMAATRLPGKPLLDIAGLPMVVQVLRRAQ-AAEIGRVAVATDAPEIAAAVTAHGGEVVMTRADHPSGSDRIFEALQTLDPDRKIETVINLQGDFPTIRPEQIGAVLGPLADPAVDIATLAAEIHTEEEATNPNVVKVI 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHIE6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhizobium etli (strain CIAT 652) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.567e-17
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV-FSTAVTSLKPED 528
            V+ +IPAR AS+R  GKPL +I G PMI +   R+K A  +  +VVA DD+++ +     G DV+MTS   ++G++R  EAL K++   K   +VN+QGD P I+P+ +   ++ L+   +AV   T  T +  ED
Sbjct:    9 VLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAKEA-AIGRVVVAVDDQQVFDAVSAAGFDVVMTSSDHQSGSDRIFEALTKVDPDGKAKFIVNVQGDLPTIDPQTVRAALRPLE--NEAVDIGTLTTEIDDED 141          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEMAT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE-ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V+ +IPAR  ++R   KPL  + G+P++ R ++R       DH VVATD  ++ E C + G  V+MT     +GT+R  E A Q     +D+++N+QGDEP +  E + G V+ + +   A   TA   +  +    P+ VK V  +   A+Y
Sbjct:    3 VLAVIPARLGATRLPRKPLRLLGGEPIVVRVYQRVVQLGVADHCVVATDHPEVQEACARHGIPVVMTRADHPSGTDRVAEVAAQPEFSSFDVLLNVQGDEPFVSREALAGAVEIVTSGL-APIGTAAVPVSVDTLQRPDVVKVVCADDRRALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANCP (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthomonas campestris pv. campestris GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.496e-17
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +PAR+AS+R  GKPL  I  +PMIQ   ER+ LA     + VATDD +IAE  Q   G  V MTS    +GT+R  E  +         VVN+QGDEP      I  V + LQ +   + + A       D FDPN VK V + HG A+Y
Sbjct:    4 VPARYASTRLPGKPLQLIGDRPMIQHVAERA-LAAGAREVWVATDDARIAEAIQGLAGVRVAMTSSVHLSGTDRLAECARIAGWDAATCVVNLQGDEPFAPAAGIRAVAQVLQRSGAEMATLAAPVDSAHDLFDPNVVKLVRNAHGDALY 152          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANCB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.496e-17
Identity = 64/161 (39.75%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  109 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            S +  S  V  +PAR+AS+R  GKPL  I  +PMIQ   +R+ LA     + VATDD +IAE  Q   G  V MTS    +GT+R  E  +         VVN+QGDEP      I  V + LQ +   + + A       D FDPN VK V + HG A+Y
Sbjct:   24 SDDASSAFVVAVPARYASTRLPGKPLQLIGDRPMIQHVADRA-LAAGAREVWVATDDARIAEAIQGLAGVRVAMTSSVHLSGTDRLAECARIAGWDAATCVVNLQGDEPFAPAAGIRAVAQVLQRSGAEMATLAAPVDSAHDLFDPNVVKLVRNAHGDALY 183          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANC8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.496e-17
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +PAR+AS+R  GKPL  I  +PMIQ   ER+ LA     + VATDD +IAE  Q   G  V MTS    +GT+R  E  +         VVN+QGDEP      I  V + LQ +   + + A       D FDPN VK V + HG A+Y
Sbjct:    4 VPARYASTRLPGKPLQLIGDRPMIQHVAERA-LAAGAREVWVATDDARIAEAIQGLAGVRVAMTSSVHLSGTDRLAECARIAGWDAATCVVNLQGDEPFAPAAGIRAVAQVLQRSGAEMATLAAPVDSAHDLFDPNVVKLVRNAHGDALY 152          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_METRJ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +IPAR A++R   KPL +I G+ MI   W R+ +   +  +VVATD  +IA   +  G   +MT     +G++R  EAL+ +  E ++D+VVN+QGD P I+P II   +  L      + +       P +A +PN VK V
Sbjct:    7 LIPARLAATRLPNKPLADIAGEAMIVHVWRRA-VEAGIGPVVVATDTAEIARTVEAAGGLAVMTRADHPSGSDRLAEALEIVDPEGRHDVVVNVQGDLPTIDPAIIGAAIVPLADRTVDIVTLCAPITDPHEADNPNVVKLV 147          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPARF++SR  GKPL  + G+P+I R  ER+ L+     + VATDD +IAE      G  V MT+ +  +G++R  E  +      ++ VVN+QGDEP      I  V   L  +   + + A T  K ED F+PN VK V + HG A+Y
Sbjct:   12 IPARFSASRLPGKPLRLLGGRPLIHRVAERA-LSAGAREVWVATDDVRIAEAVASLDGVHVAMTANTHLSGSDRLAECARIAGWDPEMCVVNLQGDEPFAPAAGIRAVAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNAHGEALY 160          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PARL1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 47/152 (30.92%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  109 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +K      + +IPAR AS+R  GKPL +I G PMI + W R+ +   +  +VVA  +++IA+  ++ G + ++T     +G++R  +A+ ++  E  + +++N+QGD P ++P +I    +AL      + + A T    E+  +PN VK V
Sbjct:    9 AKELAGHPLVVIPARMASTRLPGKPLADICGTPMIVQVWRRA-MEAGVGRVVVAAAEKEIADAVREAGGEAVLTDPDLPSGSDRVWQAVCEVDPEGHHTVILNVQGDLPTLDPALIRTAYEALVRPGADISTLAATITVEEERTNPNVVKAV 159          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_BRUC23.264e-1736.993-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHOPT4.263e-1737.323-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHIE65.567e-1738.973-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEMAT7.271e-1733.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANCP9.496e-1741.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANCB9.496e-1739.753-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANC89.496e-1741.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METRJ1.620e-1635.923-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XYLFA2.116e-1639.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PARL12.116e-1630.923-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
back to top