CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_DICNV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA-LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+AS+R   KPL  I G PMI RT ++  +A       VA DDE+I +         I T  +  NGT+R +E  + +      IVVN+QGDEPL+ P++I  V + L     A  +T  T     ++  PN VK V D  GYA+Y
Sbjct:    8 VIPARYASTRLPAKPLALIGGVPMIVRTAQQ--VAQAGFPYCVAYDDERIGDVLAAHHIPAIKTRFTHENGTQRLSEVVIARAWTDETIVVNVQGDEPLLPPDLITTVARTLIEHTQASVATLATVCDAPES--PNTVKVVCDCAGYALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_NITWN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 57/147 (38.78%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +R + +IPAR A++R  GKPL++I G PMI     R++ A  +  + VATD   IA      G + IMT     +G++R  EAL KL  E + D VVN+QGD P I P  I  V++ L      + + A      E+A +PN VK V
Sbjct:    4 NRTLVLIPARMAATRLPGKPLLDIGGLPMIVHVLRRAE-AAGIGRVAVATDTSDIATAVTAHGGEAIMTRADHPSGSDRVFEALGKLDPEGRIDTVVNLQGDFPTIRPGTIREVLQPLADNAVDIATLAAEIHTEEEAANPNVVKAV 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BRAJA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Bradyrhizobium japonicum GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            R++ +IPAR A++R  GKPL +I G PMI     R++ A  +  + VATD  +IA      G + +MT  +  +G++R +EA+QKL  E K +IV+N+QGD P I P+ I  V+         + + A      E+   P+ VK V
Sbjct:    5 RILVLIPARMAATRLPGKPLADIAGLPMIVHVLRRAE-AAGIGRVAVATDTPEIAAVVAAHGGEAVMTRTTHPSGSDRIHEAMQKLDPEGKAEIVINLQGDFPTITPQTIREVLPPFADPAVDIVTLASQIHTEEEDLAPSVVKAV 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_AZOC5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=kdsB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            S V+ +IPAR A+SR  GKPL ++ G+PMI     R+ +A  +  + VATD  +IA+  +  G + +MT     +G++R  EAL  L+      +VVN+QGD P I PE I   +  L+  P  + +      +  +  DPN VK V
Sbjct:    6 SDVLVLIPARLAASRLPGKPLADVGGRPMIVEVARRA-VAAGIGRVAVATDAVEIADAVRAAGFEAVMTRADHPSGSDRIFEALGVLDPDGAVQVVVNVQGDLPTIAPETIRAALVPLEEGPADIATLTAVITEEGERTDPNVVKVV 151          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_AQUAE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Aquifex aeolicus GN=kdsB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCVVDNHGYAIY 585
            IIPAR  S+R + KPL N+LGKP+I+  W    L  T + +++ATD E++ E  +    +V +T     +G++R    ++ L+   D+++N QGDEP +  E I  + + L+     V      + K ++A++ P  VK V+D  GYA+Y
Sbjct:    6 IIPARLGSTRLKEKPLKNLLGKPLIR--WVVEGLVKTGERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGERVV----TLARKDKEAYERPEDVKVVLDREGYALY 146          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain M12) GN=kdsB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPARF++SR  GKPL  + G+P+I R  ER+ L+     + VATDD +IAE      G  V +T+ +  +G++R  E  +      ++ VVN+QGDEP      I  V   L  +   + + A T  K ED F+PN VK V + HG A+Y
Sbjct:   12 IPARFSASRLPGKPLRLLGGRPLIHRVAERA-LSAGAREVWVATDDVRIAEAVASLDGVHVAITANTHLSGSDRLAECARIAGWDPEVCVVNLQGDEPFAPAAGIRAVAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNAHGEALY 160          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHOPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=kdsB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            ++ + +IPAR A++R  GKPL++I G PMI     R++ A  +  + VATD  +IA+     G  V+MT     +G++R  EAL KL+     + VVN+QGD P I+P+ I  V++ L      + + A      E++ +PN VK +
Sbjct:    4 TKTLVLIPARMAATRLPGKPLMDIAGLPMIVHVLRRAE-AAAIGPVAVATDTAEIADVVTAHGGRVVMTRADHPSGSDRIFEALSKLDPDGAVETVVNLQGDFPTIQPDNIRAVLEPLADPAVDIATLAAQIHTEEESLNPNVVKVI 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICBR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia bellii (strain RML369-C) GN=kdsB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R +S+R   KPL  I    +I+R +++    T L+H+ VATD ++IA   ++ G  VI T  +   GT+R  EA + +    +I  +VN+QGD P IEPE I  V++ L+ +   +  T V  ++ +     + V   +D+ G AIY
Sbjct:    9 IIPSRLSSTRLTRKPLQLIGSSTLIERVFKQVN-QTNLEHIYVATDSQEIASVIEKLGGKVIFTDSNIPTGTDRTYEAFKLIPNNQNINYIVNVQGDMPFIEPESILKVIEDLKNSKYDIV-TPVVKVEKDSVEAASNVTVAIDSKGKAIY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICB8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=kdsB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R +S+R   KPL  I    +I+R +++    T L+H+ VATD ++IA   ++ G  VI T  +   GT+R  EA + +    +I  +VN+QGD P IEPE I  V++ L+ +   +  T V  ++ +     + V   +D+ G AIY
Sbjct:    9 IIPSRLSSTRLTRKPLQLIGSSTLIERVFKQVN-QTNLEHIYVATDSQEIASVIEKLGGKVIFTDSNIPTGTDRTYEAFKLIPNNQNINYIVNVQGDMPFIEPESILKVIEDLKNSKYDIV-TPVVKVEKDSVEAASNVTVAIDSKGKAIY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANP2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 56/147 (38.10%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCV 558
            RV+ +IPAR A++R  GKPL ++ G+PMI     R+  A  +  + VATD E+IA   +  G   ++T     +G++R  EAL  L+     D+VVN+QGD P I P+ I   +  L A P    +T    +  ED   DPN VK V
Sbjct:    9 RVLVLIPARMAATRLPGKPLADVGGRPMIVEVARRA-AAAAIGPVAVATDSEEIAAAVRAAGVTAVLTRADHPSGSDRIFEALGALDPDGAVDVVVNVQGDLPTIAPQTIRSALAPL-AEPAVDIATLCAEIVVEDERTDPNVVKVV 153          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_DICNV2.116e-1638.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_NITWN2.763e-1638.783-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BRAJA2.763e-1636.303-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_AZOC52.763e-1636.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_AQUAE2.763e-1634.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XYLFM3.609e-1638.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHOPB3.609e-1635.373-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICBR4.713e-1634.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICB84.713e-1634.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANP26.155e-1638.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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