CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHIL3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            V+ +IPAR AS+R  GKPL +I G PMI +   R++ A  +  +VVA D+ ++ +     G +V+MT    ++G++R  EAL K+  E K  I+VNIQGD P I+PE +   ++ L+     + +        ED   P+ VK +
Sbjct:    9 VLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAREA-AIGRVVVAVDETRVFDAVAAAGFEVVMTRVDHQSGSDRIFEALTKVDPEGKAKIIVNIQGDLPTIDPETVRAALRPLENEAVDIGTLTTEIDNEEDKTAPHIVKII 152          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BARHE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Bartonella henselae GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +IPAR  S+R   K L  I GKPMI    E++K A     ++VATD   IA+    +G + I+T    ++G++R  EAL  +  E++Y++++N+QGD P I P  I   ++ L+ +   + +     ++  +  DPN VK +
Sbjct:    8 LIPARIGSTRLPQKALAEIAGKPMIVHVAEQAKKA-AFGRIIVATDHNNIAKVVTAYGHECIITCRDHKSGSDRIYEALTHIDPERRYNVILNVQGDLPTITPHEIISALRPLENSLTDIATLGAKIVEENEKTDPNIVKII 148          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACIF5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIY 585
            +IPAR AS+R   K L+++ G PMI++   R+ L +    +VVA D  ++ +C + +G + ++T+     GTER  EA + L    D I+VN+QGDEP + P ++    + L   P    +TA   +   D   DP+ VK V+D  G A Y
Sbjct:    6 LIPARLASTRLPRKVLLDVGGIPMIEQVRRRA-LESGAAQVVVAADHPEVVDCIRSYGGEALLTAAEHVCGTERLAEAARLLGLADDAIIVNLQGDEPGMTPALLHATAQLLLDHPQRQMATAAVPITHWDELADPHAVKLVLDAEGCARY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACIF2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIY 585
            +IPAR AS+R   K L+++ G PMI++   R+ L +    +VVA D  ++ +C + +G + ++T+     GTER  EA + L    D I+VN+QGDEP + P ++    + L   P    +TA   +   D   DP+ VK V+D  G A Y
Sbjct:    6 LIPARLASTRLPRKVLLDVGGIPMIEQVRRRA-LESGAAQVVVAADHPEVVDCIRSYGGEALLTAAEHVCGTERLAEAARLLGLADDAIIVNLQGDEPGMTPALLHATAQLLLDHPQRQMATAAVPITHWDELADPHAVKLVLDAEGCARY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_OLICO (3-deoxy-manno-octulosonate cytidylyltransferase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCV 558
            +IPAR A+SR  GKPL++I G PMI +   R++ A  L  + VATD  +IA      G + +MTS    +G++R  EAL+KL  E +   V+N+QGD P I P  I  V++   A P    +T    ++     D PN VK V
Sbjct:    9 LIPARMAASRLPGKPLLDIAGLPMIAQVLRRAREA-RLGRVAVATDSAEIAAAVAAEGGEAVMTSADHPSGSDRIFEALEKLDGEGRIKTVINVQGDLPTIAPADIRAVLQPF-AEPTVDIATLAAQIRVAAEHDNPNVVKVV 149          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_BLOFL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Blochmannia floridanus GN=kdsB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 60/159 (37.74%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ----QFG--ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD---AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARF SSRF GK L +I GKPMI R  E++ L T    ++VATD   I +  +     FG   +V +T    ++GTER +E +++     D I+V +QGDEPLI   +I  +V           +V + A       +  D N VK VV+ +G A+Y
Sbjct:    6 IIPARFFSSRFPGKLLADIQGKPMIIRVIEKA-LTTKTTKIIVATDSVSIKQIVEYEYYSFGDKVEVCLTYSDHQSGTERISEIVKRYRFADDQIIVQLQGDEPLISSYMIHQIVDVFNMTTSNNISVSTLATPIFFYNEVIDSNIVKVVVNIYGVALY 163          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RHOCS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=kdsB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.371e-15
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 564
            +IPAR A+SR   KPL +I G+PMI    +R++ A  +  +VVA  D  IA+     G   ++T  +  +G++R  EA+ +++   ++D VVN+QGD P I+P  +  V   L      + + A   ++ E+  DPN VK VV+
Sbjct:   11 VIPARLAASRLPDKPLADIHGRPMIAHVLDRAREAD-IGPVVVACADAAIADAVAAAGGRAVLTDPAHPSGSDRVWEAVCRVDPDGRHDAVVNVQGDLPTIDPAAVRAVFGPLARPGTDIATLAAEIVRVEERTDPNVVKAVVE 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_METS4 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacterium sp. (strain 4-46) GN=kdsB PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 558
            +IPAR A++R   KPL  I G+PMI   W R+ + + L  +VV TD   I    +  G   ++T     +G++R  EAL  +  E ++D+VVN+QGD P I+P +I   V  L      + +      +PE+  +P+ VK V
Sbjct:    7 LIPARLAATRLPDKPLAEICGEPMIVHVWRRA-IESGLGPVVVCTDTPAIVAAVEAVGGLGVLTRPDHPSGSDRLAEALAIIDPEGRHDVVVNVQGDLPTIDPAVIAASVTPLADRAVDIATLCAVITRPEERTEPSVVKVV 147          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANOR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthomonas oryzae pv. oryzae GN=kdsB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.339e-15
Identity = 60/150 (40.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPAR+AS R  GKPL  I  +PMIQ   ER+ LA     + VATDD +IAE      G  V MT  +  +GT+R  E  +     +   VVN+QGDEP      I  V   LQ +   + + A       D FDPN VK V +  G A+Y
Sbjct:   13 IPARYASKRLPGKPLQRIGNRPMIQHVAERALLAGA-RAVWVATDDARIAEAIAHLPGVHVAMTGTAHLSGTDRLAECARIAGWDEQTCVVNLQGDEPFAPAAGIGAVADLLQHSGAEMATLAAPVDSAHDLFDPNVVKLVRNARGDALY 161          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_XANOM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=kdsB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.339e-15
Identity = 60/150 (40.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPAR+AS R  GKPL  I  +PMIQ   ER+ LA     + VATDD +IAE      G  V MT  +  +GT+R  E  +     +   VVN+QGDEP      I  V   LQ +   + + A       D FDPN VK V +  G A+Y
Sbjct:   13 IPARYASKRLPGKPLQRIGNRPMIQHVAERALLAGA-RAVWVATDDARIAEAIAHLPGVHVAMTGTAHLSGTDRLAECARIAGWDEQTCVVNLQGDEPFAPAAGIGAVADLLQHSGAEMATLAAPVDSAHDLFDPNVVKLVRNARGDALY 161          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_RHIL36.155e-1635.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BARHE6.155e-1633.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACIF56.155e-1635.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACIF26.155e-1635.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_OLICO1.050e-1539.163-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BLOFL1.050e-1537.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHOCS1.371e-1534.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METS41.791e-1534.513-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANOR2.339e-1540.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XANOM2.339e-1540.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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