CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICAE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia africae (strain ESF-5) GN=kdsB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R +S+R + KPL  I    +I+R + +   A  L+H  VATD E+IA    + G  VI T  +   GT+R  EA + +    +I  +VN+QGD P IEP  I  +++ L+ +   +  T +  +  E     + V   VD+ G A+Y
Sbjct:    9 IIPSRLSSTRLKQKPLQLIGSITLIERVFTQVNQAG-LEHTYVATDSEEIASVITKVGGKVIFTDSAIPTGTDRTYEAFKLIPNNQNINYIVNVQGDMPFIEPSSILKIIEYLKNSKYDIV-TPIVKVDRESVKASSNVTVAVDSAGTALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_STRMK (3-deoxy-manno-octulosonate cytidylyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=kdsB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPAR+A+SR  GKPL  + G+P++     R+ L      + VATDD++IA+         V MT+ S  +GT+R  E  +      D +VVN+QGDEP      I  V +AL    AP +  +TAV     E  FDPN VK V +    A+Y
Sbjct:    8 IPARYAASRLPGKPLRLLGGEPLVLHVARRA-LQAGAGEVWVATDDQRIADALSGLAEVKVAMTATSHASGTDRLAECARIAGWADDTVVVNLQGDEPFAPAAGIRAVAQALVEGNAPMSTLATAVED--AETLFDPNVVKLVRNVRNEAMY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICAH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia akari (strain Hartford) GN=kdsB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R +S+R + KPL  I    +I+R +++   A  L+H  VATD E+I+   ++    VI T  +   GT+R  EA + +    +I  +VN+QGD P IEP  +  +++ L+ +   +  T V  +  E     + V   VD+ G A+Y
Sbjct:    9 IIPSRLSSTRLKQKPLQLIGSITLIERVFKQINQAN-LEHTYVATDSEEISNIIKKVRGKVIFTDSAIPTGTDRTYEAFKLIPNNQNINYIVNVQGDMPFIEPSSVLKIIEYLKNSEYDIV-TPVVKVDRESVEASSNVTVAVDSAGKALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_STRM5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  142 IPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IPAR+A+SR  GKPL  + G+P++     R+ L      + VATDD++IA+         V MT+ S  +GT+R  E  +      D +VVN+QGDEP      I  V +AL      + + A T       FDPN VK V +    A+Y
Sbjct:    8 IPARYAASRLPGKPLRLLGGEPLVLHVARRA-LQAGAGEVWVATDDQRIADALSGLAEVKVAMTAASHASGTDRLAECARIAGWADDTVVVNLQGDEPFAPAAGIRAVAEALVGGNAPMSTLATTVEDAHTLFDPNVVKLVRNVRNEAMY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICPR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia prowazekii GN=kdsB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R  S+R   KPL  I    +I+R +++   A  + H  VATD E+IA   ++    VI T  +   GT+R  EA + +   ++I  ++N+QGD P IE   I  +++ L+ +   +  T V  +  E   D + V   VD  G A+Y
Sbjct:    9 IIPSRLNSTRLIQKPLQLIGSITLIERVFQQVNKAN-IHHTYVATDSEEIANVIKKISGKVIFTDSNIPTGTDRAYEAFKLIPNNHNIHYIINVQGDIPFIEHRSILKIIEYLKNSEYDIV-TPVVKVDRESIEDSSNVTVAVDYTGKALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KPSU1_ECOLX (3-deoxy-manno-octulosonate cytidylyltransferase (Fragment) OS=Escherichia coli GN=kpsU PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT 330
            S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD+++ +  Q FG   IMT
Sbjct:    2 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDQRVEKAVQAFGGKAIMT 70          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_RICTY (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia typhi GN=kdsB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.569e-11
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIP+R  S+R   KPL  I    +I+R +++   A  + H  VATD E+IA   ++ G  VI+T      GT+R  EA + +    +I  ++N+QGD P IE   I  +++ L+ +   +  T V  +  E     + V   VD  G A+Y
Sbjct:    9 IIPSRLNSTRLIQKPLQLIGSITLIERVFKQVNKAN-IQHTYVATDSEEIANIIKKIGGKVILTDSDIPTGTDRTYEAFKLIPNNNNIHYIINVQGDIPFIEHRSILKIIEYLKNSEYDIV-TPVVRVDRESIEASSNVTVAVDYMGKALY 157          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_RICAE9.827e-1433.773-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_STRMK3.734e-1338.163-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICAH3.734e-1332.453-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_STRM58.319e-1336.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICPR2.421e-1232.453-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KPSU1_ECOLX1.201e-1147.833-deoxy-manno-octulosonate cytidylyltransferase (F... [more]
KDSB_RICTY1.569e-1132.453-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
back to top