CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACTSZ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=kdsB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.340e-29
Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMI+  WE+++  +    +VVATD+E++     QFG +V MTSE   +GTER  E ++KL+   D I+VNIQGDEPLI P I+  V   L      + S AV     ++ F+PN VK + D  GY +Y
Sbjct:    7 IIPARFASSRLPGKPLADIAGKPMIRHVWEKAR-RSGASRVVVATDNEQVKNAVLQFGGEVCMTSEKHNSGTERLAEVVEKLDIADDEIIVNIQGDEPLIPPVIVQQVAANLAKYRVNMASLAVKIEDVQELFNPNAVKVLTDQAGYVLY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPK (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas putida (strain KT2440) GN=kdsB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.281e-29
Identity = 71/150 (47.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAI 582
            +IPAR  S+R  GKPL+ I GKPM+Q  WE+++  +    +V+ATDD  I E CQ FGA+V+MT     +GT+R  E    L    D IVVN+QGDEPLI P IID V   L A P+A  +T    + +PE  F+PN VK V D +G A+
Sbjct:    8 VIPARLRSTRLPGKPLLLIAGKPMVQHVWEQAR-KSGASRVVIATDDTSILEACQAFGAEVMMTRADHESGTDRLAEVAAYLGLPADAIVVNVQGDEPLIPPVIIDQVAANLAAHPEAGIATLAEPIHEPETVFNPNAVKVVSDKNGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PASMU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pasteurella multocida GN=kdsB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.281e-29
Identity = 70/150 (46.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+AS+R  GKPL  I GKPMI   +E++ + +    ++VATD E++A   + FGA+V MTSE+ ++GTER  E ++KL    D I+VNIQGDEPLI P I+  V + L      + S AV    PE+ F+PN VK + D+ GY +Y
Sbjct:    7 IIPARYASTRLPGKPLAEIAGKPMIAHVFEKA-MQSGAKRVIVATDHEQVATVARGFGAEVCMTSETHQSGTERLAEVVEKLGIAEDEIIVNIQGDEPLIPPAIVRQVAENLAKYQVKMASLAVNITDPEELFNPNAVKVLTDHAGYVLY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBHB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.082e-28
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ASSR  GKPL +I GKPMIQ  +E++  A   D +++ATDD++++   +QFG  V MTS +  +GTER  E ++K+    D IVVN+QGDEPLI P II  V   L      + + AV     E+ F+PN VK V D  GYA+Y
Sbjct:    6 VIPARYASSRLPGKPLADIGGKPMIQWVYEQALQAGAED-VIIATDDKRVSAAAEQFGGKVCMTSPNHESGTERLAEVVEKMAIPADHIVVNVQGDEPLIPPSIIRQVADNLAGCDAPMATLAVEIESEEEVFNPNAVKVVADERGYAMY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOLS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kdsB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.082e-28
Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIY 585
            ++V IIPAR+ S+RF GK L ++ GKPMIQ  +E++  A+ +   +VATDD +IA+   Q G + IMTS     GT+R  E  + L+   DI+VN+QGDEPLI+P +I+  ++     P     T  + +K   D   PN VK V DN+GYA+Y
Sbjct:    2 QIVAIIPARYGSTRFPGKALADLAGKPMIQHVYEQTIRASLVSRAIVATDDRRIADVIHQIGGEAIMTSTDHETGTDRLAEVARGLDA--DIIVNVQGDEPLIDPAMINQAIEPFLGNPGLKMGTLKSRVKCLHDFLSPNVVKVVTDNNGYALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEE4 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas entomophila (strain L48) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.412e-28
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAI 582
            +IPAR  S+R  GKPL+ I GKPM+Q  WE+++  +    +V+ATDD  I E C+ FGA+V++T     +GT+R  E   +L    D IVVN+QGDEPLI P IID V   L   P+A  +T    + +PE  F+PN VK V D HG A+
Sbjct:    8 VIPARLRSTRLPGKPLLPIAGKPMVQHVWEQAR-RSGASRVVIATDDASIVEACRAFGAEVLLTRADHESGTDRLAEVAAQLGLAPDAIVVNVQGDEPLIPPVIIDQVAANLADHPEAGIATLAEPIHEPETIFNPNAVKVVSDKHGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sulfurreducens GN=kdsB PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.412e-28
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIY 585
            +  IIPARFAS+RF GK L +I GKPM+Q  +ER+  A  +  +VVATDD++IA+  + FG  V MTS     GT+R  E   ++    +I+VN+QGDEPLIEP +ID  +  L   P     T  + ++   D   PN VK V D  GYA+Y
Sbjct:    3 ITAIIPARFASTRFPGKALADIAGKPMVQHVYERTARARLVSEVVVATDDDRIAQAVRGFGGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIEPAMIDEAIAPLAENPAVRMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SYNAS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIY 585
            ++V IIP+R++SSRF+GKPL ++ GKPMIQ  +ER   +  + +  VATDD +I E  ++FG   IMT+   R+GT+R  EA+  L+ K  DIVVN+QGD+P+ EPE I  V + L+  P    +T +  + + E+   PN VK V D +  A+Y
Sbjct:    3 KIVCIIPSRYSSSRFQGKPLADLCGKPMIQHVYERVLKSELVSYAAVATDDSRIFEAVRKFGGKAIMTAARHRSGTDRIAEAVNSLDLKDDDIVVNVQGDQPIFEPEQIAEVTRPLREDPSLPMATLIYRIVREEEITHPNAVKVVFDRNFNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEB9 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella baltica (strain OS195) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDD++I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN+ YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEB8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella baltica (strain OS185) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDD++I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN+ YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGFGGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGFEIVNKTELDDPMHVKMVFDNNNYALY 157          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_ACTSZ6.340e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEPK8.281e-2947.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PASMU8.281e-2946.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBHB1.082e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOLS1.082e-2842.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEE41.412e-2846.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSL1.412e-2844.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SYNAS1.845e-2843.233-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEB91.845e-2843.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEB81.845e-2843.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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