CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEB5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDD++I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN+ YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGFGGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEB2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella baltica (strain OS223) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDD++I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN+ YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGFGGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAEI8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMIQ  +E++ L +  + +++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + S AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVAKNFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp. (strain MR-7) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN  YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGYEIVNKAELDDPMHVKMVFDNDYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp. (strain MR-4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN  YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGYEIVNKAELDDPMHVKMVFDNDYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHESA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp. (strain ANA-3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN  YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGYEIVNKAELDDPMHVKMVFDNDYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEON (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella oneidensis GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P    + +     +   +  DP  VK V DN  YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGEFEMATLGYEIVNKAELDDPMHVKMVFDNDYYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain PittEE) GN=kdsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMIQ  +E++ L +    +++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + S AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKNFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBVY (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio vulnificus (strain YJ016) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 72/152 (47.37%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPL +I GKPM+Q  +E++  A   D +++ATDD+++A+    FG  V MTS +  +GTER  E +Q +    D IVVN+QGDEPLI P II  V + L A  AP A    A+TS   E+ F+PN VK V D  GYA+Y
Sbjct:    6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGKVCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBVU (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio vulnificus GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 72/152 (47.37%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPL +I GKPM+Q  +E++  A   D +++ATDD+++A+    FG  V MTS +  +GTER  E +Q +    D IVVN+QGDEPLI P II  V + L A  AP A    A+TS   E+ F+PN VK V D  GYA+Y
Sbjct:    6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGKVCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALY 154          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_SHEB51.845e-2843.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEB21.845e-2843.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEI81.845e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHESR2.409e-2844.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHESM2.409e-2844.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHESA2.409e-2844.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEON2.409e-2844.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIE2.409e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBVY3.147e-2847.373-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBVU3.147e-2847.373-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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