CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEDO (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 70/158 (44.30%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD----AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +V  +IPARF SSRF GKPL  I GKPMIQ  +ER+ LA  LD + VATDD++I +  + FG  V+MTS +  +GT+R N+A+++L     D+V+N+QGD+PLI+P  I+ +V   +  P     A     +T     D  DP  VK V DN   A+Y
Sbjct:    2 KVTLLIPARFGSSRFPGKPLAPINGKPMIQHVYERASLAKGLDAIYVATDDDRIKDAVEAFGGKVVMTSAAAASGTDRINDAIEQLGLSDDDLVINLQGDQPLIDPISIEQIVSLFERHPGEFEMATLGFEITDKSELD--DPMHVKMVFDNDFNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_MARMM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Maricaulis maris (strain MCS10) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 525
            V+ +IPAR+ S+RF GKPL  I G+ MI+R W  +     +D +VVATDD++I +     G + +MT   CRNGTER  +A+++L    DIV+N+QGD PLI P +I GV + L+A P    +T   +L PE
Sbjct:    3 VLAVIPARYGSTRFPGKPLAMIAGQMMIERVWRIAAAVPGVDRVVVATDDQRIMDAVAAAGGEAVMTDPDCRNGTERALDAVKRLNSDADIVINVQGDAPLIPPWVIGGVAETLRADPSLQMATPAIALPPE 134          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae GN=kdsB PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMIQ  +E++ L +    +++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + S AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain PittGG) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.147e-28
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMIQ  +E++ L +  + +++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + S AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVVKNFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDGEELFNPNAVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CYTH3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.110e-28
Identity = 65/153 (42.48%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  130 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIY 585
            +V IIPAR+AS+RF GKPL+ I GK MIQ  +++ +    +  ++VATDD++I     +FG  V+ T     +GT+RC EA QKL K +D ++N+QGDEP I+PE I  +   L   PD   +T +  ++ E+  F+PN  K +V+ +G AIY
Sbjct:    7 IVAIIPARYASTRFPGKPLIQINGKTMIQCVYDQVRSTPEITEVLVATDDDRIEAEVLRFGGKVVRTLPEHPSGTDRCFEAYQKLNKPFDFIINVQGDEPFIQPEQIRTLAGIL--TPDVELATLIKKIEDEETLFNPNTPKVLVNANGEAIY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SOLUE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 68/154 (44.16%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIY 585
            +++G+IPARF+S+RF GK L  I  K M+Q  +ER+ LAT L   ++ATDDE++    + FGA V MT     +GT+R  E      +  +I+VNIQGDEPLI+P  ID  V  L   PD +  T    ++ P +  DPN VK V D+ G AIY
Sbjct:    4 KILGVIPARFSSTRFPGKVLAQIANKTMLQHVYERAGLATYLTSTIIATDDERVYTAAKSFGARVRMTRADHLSGTDRVAEVAS--AENAEIIVNIQGDEPLIDPAAIDAAVLPLVHEPDVLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SACD2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIY 585
            +IPARFASSR  GKPL +I GKPMIQ  +ER+KL+     ++VATD++++ +  ++FG +V+MTS    +GT+R  E  Q+L   K +I+VN+QGDEPLI P +I+ V   +Q    A  +T    L + E  FDPN VK V D +G A+Y
Sbjct:    6 VIPARFASSRLPGKPLADIAGKPMIQWVYERAKLSDA-SKVIVATDNQQVFDTVKEFGGEVLMTSPKHESGTDRLQEVAQQLGLAKDEIIVNVQGDEPLIPPAVINQVAANIQGNSWASAATLSEPLVESEMVFDPNAVKVVSDVNGAALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEF5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 69/150 (46.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL  I GKPMIQ  WE+++  ++ + +VVATDD++I E CQ FGA+ ++T E   +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A  +A  +T    ++  +  F+PN VK V D +G A+
Sbjct:    8 VIPARYASTRLPGKPLQLIAGKPMIQWVWEQAR-KSSAERVVVATDDQRIVEACQGFGAEALLTREDHNSGTDRLAEVAAQLGLAADAIVVNVQGDEPLIPPSVIDQVAANLAAHTEARMATLAEPIEDVQTLFNPNVVKVVSDLNGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHLPD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=kdsB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 73/156 (46.79%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIY 585
            + V +IPAR  SSR E K L ++ G+P+I RTW ++  +   D +VVATD+++IA   Q +GA+V+MTS   R GTER  EA + +E   DI VN+QGDEPLI PE ID  ++          ST V  L PED     D N VK V+DN GYA+Y
Sbjct:    2 KAVILIPARLDSSRLEKKMLADLQGEPLIVRTWRQALKSRLADRVVVATDNDEIASVLQAYGAEVVMTSPHARCGTERIAEAAKSIEG--DIYVNLQGDEPLISPENIDLALEPFFTETPPDCSTLVFPLLPEDFRQLEDINTVKVVMDNAGYALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEAE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa GN=kdsB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 68/150 (45.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLAL 156          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_SHEDO3.147e-2844.303-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_MARMM3.147e-2844.703-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIN3.147e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIG3.147e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CYTH34.110e-2842.483-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SOLUE5.367e-2844.163-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SACD25.367e-2846.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEF55.367e-2846.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLPD5.367e-2846.793-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEAE7.010e-2845.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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