CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12684 contig Ccv1_Contig12684:148..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=kdsB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 68/150 (45.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=kdsB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 68/150 (45.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=kdsB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +V+ATDDE+I   CQ FGA+V++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P++  +T    +    A F+PN VK   D +G A+
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVIATDDERILAACQGFGAEVLLTRADHNSGTDRLEEVASRLGLAADAIVVNVQGDEPLIPPALIDQVAANLAAHPESAIATLAEPIHDVAALFNPNVVKVATDVNGLAL 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAES2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus somnus (strain 2336) GN=kdsB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 70/150 (46.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR  GKPL +I GKPMIQ  WE+++ +     +VVATD E++A   + F  +V MTS    +GTER  E ++KL    D I+VNIQGDEPLI P I+  V + LQ     + + AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARYASSRLPGKPLADIAGKPMIQHVWEKAQQSGAT-RVVVATDYEEVARAVRGFDGEVCMTSSQHNSGTERLAEVIEKLAVPDDEIIVNIQGDEPLIPPVIVSQVAQNLQKYQVNMATLAVKIEDVEELFNPNVVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB1_ACTP2 (3-deoxy-manno-octulosonate cytidylyltransferase 1 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=kdsB1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 66/150 (44.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR   KPL++I GKPMIQ  WE+++ A     +++ATD  +I    + FGA+V MTS+   +GTER  E ++K++   D I+VN+QGDEPLI P I+  V + L      + + AV     E+ F+PN VK + D +G A+Y
Sbjct:    6 IIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQQAGAT-RVIIATDHPEIEATAKAFGAEVCMTSDQHNSGTERLAEVIEKMQIADDEIIVNVQGDEPLIPPVIVSQVAENLDRCQVNMATLAVKLTTKEELFNPNAVKALADKNGMALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_HAES1 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus somnus (strain 129Pt) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.196e-27
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR  GKPL +I GKPMIQ  WE+++ +     +VVATD E++A   + F  +V MTS    +GTER  E ++KL    D I+VNIQGDEPL+ P I+  V + LQ     + + AV     E+ F+PN VK + D  GY +Y
Sbjct:    6 IIPARYASSRLPGKPLADIAGKPMIQHVWEKAQQSGAT-RVVVATDYEEVARAVRGFDGEVCMTSSQHNSGTERLAEVIEKLAIPDDEIIVNIQGDEPLVPPVIVSQVAQNLQKYQVNMATLAVKIEDVEELFNPNVVKVLTDKDGYVLY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_CHRSD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.196e-27
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  124 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIY 585
            S VV +IPAR+ +SR  GKPL+++ G+PMI R W+R+   +    +V+ATDDE+I    Q +GADV++T+    +GT+R  E   +LE   D IVVN+QGDEPL+ P +ID VV+ L     A  +T    +   E  F+PN VK V D HG A+Y
Sbjct:    2 SDVVVVIPARYGASRLPGKPLLDLHGEPMIARVWQRA-CKSDATRVVIATDDERIEAAMQPYGADVMLTAPDHPSGTDRLAEVAARLELDADTIVVNVQGDEPLLPPALIDQVVRRLADDTTASIATLAEPIGDVETLFNPNVVKVVRDLHGRALY 156          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACTPJ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.196e-27
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR   KPL++I GKPMIQ  WE+++ A     +++ATD  +I    + FGA+V MTS+   +GTER  E ++K++    +I+VN+QGDEPLI P I+  V + L      + + AV     E+ F+PN VK + D +G A+Y
Sbjct:    6 IIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQQAGAT-RVIIATDHPEIEATAKAFGAEVCMTSDQHNSGTERLAEVIEKMQIADNEIIVNVQGDEPLIPPVIVSQVAENLDRCQVNMATLAVKLTTKEELFNPNAVKALADKNGMALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ACTP7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.196e-27
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+ASSR   KPL++I GKPMIQ  WE+++ A     +++ATD  +I    + FGA+V MTS+   +GTER  E ++K++    +I+VN+QGDEPLI P I+  V + L      + + AV     E+ F+PN VK + D +G A+Y
Sbjct:    6 IIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQQAGAT-RVIIATDHPEIEATAKAFGAEVCMTSDQHNSGTERLAEVIEKMQIADNEIIVNVQGDEPLIPPVIVSQVAENLDRCQVNMATLAVKLTTKEELFNPNAVKALADKNGMALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 68/152 (44.74%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL +I GKPMIQ  +ER+ LA  L  + VATDD +I    + FG  V+MT E+  +GT+R +EA+  L     D+V+N+QGD+PLI+P +I+ +V   +  A +   +T    +K E    DPN VK V DN+  A+Y
Sbjct:    6 LIPARYGSSRFPGKPLAHINGKPMIQHVYERASLAKGLKDIYVATDDVRIKNAVESFGGKVVMTGENAASGTDRIDEAISILGLADDDLVINLQGDQPLIDPIVIEQLVSVCERHAGEFDMATLGVEIKDEAQLNDPNHVKVVFDNNHNALY 157          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_PSEAB7.010e-2845.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA87.010e-2845.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA77.010e-2844.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAES27.010e-2846.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB1_ACTP29.155e-2844.003-deoxy-manno-octulosonate cytidylyltransferase 1 ... [more]
KDSB_HAES11.196e-2746.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHRSD1.196e-2744.873-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACTPJ1.196e-2743.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ACTP71.196e-2743.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEPA1.562e-2744.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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