CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12684 contig Ccv1_Contig12684:148..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_IDILO (3-deoxy-manno-octulosonate cytidylyltransferase OS=Idiomarina loihiensis GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 72/151 (47.68%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSR  GKPL +I GKPMIQ   ER++ A+    ++VATDD +I E   +FG  V+MTS    +GTER  E +++L   + ++VVN+QGDEP I PEII  V   L     A  +T AV     ED F+PN VK V D  GYA+Y
Sbjct:    6 VIPARYGSSRLPGKPLADIAGKPMIQHVVERAE-ASGAAEVIVATDDMRIKEGVDKFGGRVMMTSSEHSSGTERLAEVIEQLALAENEVVVNVQGDEPFIPPEIIRQVADNLANQRQAPMATLAVPITDAEDIFNPNTVKVVTDAAGYALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_AERS4 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Aeromonas salmonicida (strain A449) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 72/156 (46.15%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI----AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V +IPAR+AS+R  GKPL +I GKPM+Q   E++ L +  D ++VATDDE++    A   +Q G +V MTS+  ++GTER  E  +      D IVVN+QGDEPLI P II  V   L AA   + + +V     E+AF+PN VK V D  GYA+Y
Sbjct:    4 VVVIPARYASTRLPGKPLADIHGKPMVQHVVEKA-LQSGADRVIVATDDERVHSALASFAEQAGVEVCMTSQDHQSGTERLAEVCRHYGFSADTIVVNVQGDEPLIPPAIIRQVADNLAAASAPMATLSVPIQDAEEAFNPNAVKVVTDKEGYALY 158          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_MARAV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+AS+R  GKPL  I GKPMIQ   ER+   +    +VVATDD +I E C+ FGA+VIMTS +  +GT+R  E  +KL+   D  VVN+QGDEPLI PE+I+ V   L+   +A  +T    +      F+PN VK V D  G A Y
Sbjct:    6 VIPARYASTRLPGKPLAMIAGKPMIQHVCERAN-ESRASRVVVATDDARIEEACRGFGAEVIMTSPNHASGTDRLEEVARKLQLDPDHRVVNVQGDEPLIPPELINQVADNLEQYQEAAIATLCERIHDARQVFNPNVVKVVFDARGMAHY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_KLEP7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 70/152 (46.05%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V IIPARFAS+R  GKPL +I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D I+VNIQGDEP+I P I+  V + L A+   + + AV     E+AF+PN VK V+D  GYA+Y
Sbjct:    4 VVIIPARFASTRLPGKPLQDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTIIVNIQGDEPMIPPAIVRQVAENLAASSSGMATLAVPIHDAEEAFNPNAVKVVMDAKGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_FUSNN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIY 585
            + +GIIPAR++S+R EGKPL  I G  MI+  ++R+K  + LD L+VATDDE+I      FG   IMTS++  NGT R  E  +K+  +YD ++NIQGDEPLIE E+I+ +++  +   D   +T     L  E+  +PN VK V D + YAIY
Sbjct:    2 KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVINFGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLIEYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIY 153          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_ANADF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=kdsB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 67/153 (43.79%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            RV  IIPARF + RF GKPL ++ G+P+I    +R++ A  +D + VATDD +IA   +  GA  I+T  +   GT+R  EA +KL    D+VVN+QGDEPLIEPE I+ +V+A++   +   +T    L+PE+      VK V D HG A+Y
Sbjct:    3 RVAVIIPARFGAQRFPGKPLADLAGQPLIAHVVDRARRARGVDAVAVATDDARIAAAAEAAGAAAILTGPA-STGTDRVAEAARKLMPSPDVVVNLQGDEPLIEPEAIETLVRAMEGGVE--MATLARPLEPEELERTQVVKVVTDRHGDALY 152          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+Y
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae GN=kdsB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+Y
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_VIBC3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=kdsB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+Y
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSESM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas syringae pv. tomato GN=kdsB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 66/150 (44.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAI 582
            +IPAR+ SSRF GKPL  I GKPM+Q  WE+++  ++ + +V+ATDD +I E C+ FGA+V++T +   +GT+R  E   +L    + IVVN+QGDEPLI P +ID V   L   P+A  +T    +    A F+PN VK   D +G A+
Sbjct:    8 VIPARYGSSRFPGKPLKTIAGKPMVQLVWEQAR-KSSAERVVIATDDARIVEACRAFGAEVLLTRDDHNSGTDRLAEVATQLGLAANAIVVNVQGDEPLIPPAVIDQVAANLAKHPEAGMATLAEPIDDVAALFNPNIVKVSTDINGLAL 156          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_IDILO1.562e-2747.683-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_AERS41.562e-2746.153-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_MARAV2.040e-2747.023-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_KLEP72.040e-2746.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FUSNN2.040e-2744.813-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ANADF2.040e-2743.793-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCM2.664e-2745.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCH2.664e-2745.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBC32.664e-2745.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSESM3.479e-2744.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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