CX300513

Overview
NameCX300513
Unique NameCX300513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_AERHH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=kdsB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  133 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI----AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            V +IPAR+AS+R  GKPL +I GKPM+Q   E++ L +  D ++VATDDE++    A C  Q G +V MTS+  ++GTER  E  +      D IVVN+QGDEPLI P II  V   L AA   + + +V     E+ F+PN VK V D  GYA+Y
Sbjct:    4 VVVIPARYASTRLPGKPLADIHGKPMVQHVVEKA-LQSGADRVIVATDDERVQQALAACAGQAGFEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIQDAEEVFNPNAVKVVTDQEGYALY 158          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEFN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 67/157 (42.68%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  127 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIY 585
            +V  +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  LD + VATDD++I +  + FG  V+MTS    +GT+R N+A+  L     D+V+N+QGD+PLI+P  I+ ++   +  P   F  A    +     +  DP  VK V DN   A+Y
Sbjct:    2 KVTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLDSIYVATDDDRIKDAVESFGGKVVMTSPDAASGTDRINDAIALLGLNDDDLVINLQGDQPLIDPISIEQIISLFERHP-GEFEMATLGFEIVDKRELDDPMHVKMVFDNDHNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_METFK (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 72/151 (47.68%), Postives = 97/151 (64.24%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIY 585
            +IPAR+ASSR  GKPL++I GKPM+ R  ERS LA+    +VVATD E+I E    +G DV+MTS    +GT+R  E +Q+   + D IVVN+QGDEPLI+P +I  V   L A  +A  +TA   L    +  +PN VK V+D  G+A+Y
Sbjct:    6 VIPARYASSRLPGKPLLDIAGKPMVVRVIERS-LASGAAEVVVATDHERIQEAVSSYGYDVMMTSADHASGTDRIAEVVQQRGWEDDTIVVNVQGDEPLIDPRLIGEVAGNLSAHAEASMATACHVLHDTPSILNPNIVKVVLDQQGHALY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB2_ACTP2 (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=kdsB2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+AS+R   KPL++ILGKPMIQ  WER+K A     +++ATD  +IAE   +FG +V +TS+   +GTER  E + K+    D I+VN+QGDEPLI P II  V + L      + + AV   + ++ F+PN VK + D +G A+Y
Sbjct:    6 IIPARYASTRLPRKPLLDILGKPMIQHVWERAKQAGG-HRVIIATDHSEIAEVVTRFGGEVCLTSDKHSSGTERLAEVVSKMNISDDEIIVNVQGDEPLIPPCIIKQVAENLDNHQVNMATLAVKLTQRDELFNPNVVKVLSDKNGMALY 154          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEAM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.934e-27
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L+ + VATDDE+I +  + FG  V+MT     +GT+R  +A+ +L     D+V+N+QGD+PLI+P  I+ +V+  +  P   F  A    +  D     DP  VK V DN  YA+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERAALAKGLNAIYVATDDERIKDAVESFGGKVVMTGADAASGTDRIEDAITQLGLADDDLVINLQGDQPLIDPISIEQIVELFRRHP-GEFEMATLGYQISDKAELDDPKHVKMVFDNDMYALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_DESVV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.934e-27
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  136 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            GIIPAR+ASSRF GKPL +ILG+PM    ++R++     D + +ATDD +IA+     G   +MT+E   +GT+R +EA  +L    D +VVNIQGDEP ++P ++D +V     A   V +T   +L  ++A  P+RVK VV  +G A+Y
Sbjct:    9 GIIPARYASSRFPGKPLADILGRPMFWHVYDRARRCAAFDEVALATDDARIADAANVLGVPCVMTAEHHPSGTDRVHEAAMRLGVADDAVVVNIQGDEPALDPRMLDQLVAPFADASVRV-ATLAMALSAQEAQSPDRVKVVVAANGDALY 158          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_SHEWM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 65/152 (42.76%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L  + VATDD++I E  + FG  V+MT     +GT+R  +A+ +L  K  D++VN+QGD+PLI+P  I+ V+   +  P   ++ +  V   +  +  DP  VK V DN+  A+Y
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTAIYVATDDDRIKEAVEAFGGKVVMTDPQAASGTDRIEDAITQLGLKDDDLIVNLQGDQPLIDPISIEQVITLFERHPGEFSMATLGVEITEKAELDDPKHVKMVFDNNFNALY 157          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_MANSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPARFASSR  GKPL +I GKPMI    E+++L+     +VVATD+E++ +  +QFG +V MTS    +GTER  E ++ L    D I+VNIQGDEPLI P I+  V + L      + S AV   +  + F+PN VK + D  GY +Y
Sbjct:    7 IIPARFASSRLPGKPLADIAGKPMIIHVLEKARLSGAT-RVVVATDNEEVKQAVEQFGGEVCMTSAKHNSGTERLAEVVETLNIPDDEIIVNIQGDEPLIPPVIVSQVAENLCKFKVNMASLAVKIHESAELFNPNAVKVLTDKDGYVLY 155          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_DESVH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  136 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            GIIPAR+ASSRF GKPL  ILG+PM    ++R++     D + +ATDD +IA+     G   +MT+E   +GT+R +EA  +L    D +VVNIQGDEP ++P ++D +V     A   V +T   +L  ++A  P+RVK VV  +G A+Y
Sbjct:    9 GIIPARYASSRFPGKPLAEILGRPMFWHVYDRARRCAAFDEVALATDDARIADAANVLGVPCVMTAEHHPSGTDRVHEAAMRLGVPDDAVVVNIQGDEPALDPRMLDQLVAPFADASVRV-ATLAMALSAQEAQSPDRVKVVVAANGDALY 158          
BLAST of CX300513 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA6 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=kdsB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.012e-26
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  139 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIY 585
            IIPAR+AS+RF GKPLV I GKPM+Q  ++R+ + +   +++VATDD +IA+    FG    MT     +GTER  E ++  +    +IVVN+QGDEP I  E I  V + L     A  +T AV  +  E+AF+PN VK V+D  GYA+Y
Sbjct:    6 IIPARYASTRFPGKPLVEINGKPMVQHVYDRA-IESGASNVIVATDDARIAKAVSDFGGKYCMTGAHHESGTERLAEVVEMQDMLSQEIVVNVQGDEPFIPAENIQQVAENLHHHQQAEMATLAVKIVDVEEAFNPNAVKVVLDKQGYAMY 155          
The following BLAST results are available for this feature:
BLAST of CX300513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_AERHH3.479e-2746.153-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEFN4.544e-2742.683-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METFK4.544e-2747.683-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB2_ACTP24.544e-2745.333-deoxy-manno-octulosonate cytidylyltransferase 2 ... [more]
KDSB_SHEAM5.934e-2743.793-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESVV5.934e-2743.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEWM7.751e-2742.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_MANSM7.751e-2746.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESVH7.751e-2743.053-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA61.012e-2645.033-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC07011B01SK SaltLeaf1 Citrus clementina cDNA clone C07011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300513 ID=CX300513; Name=CX300513; organism=Citrus clementina; type=EST; length=586bp
GTTCGCCGTCCGAATCTTCTTCCTCAAACAAAGTCGTGGATCGTGCACGG
CATTGTAGCCGGAGCAGCAATTGCTGTTGCCGTCGGTGCGCGCGCCTATC
TGGGTCGATCGAAGAACTTTCGGAGCAGGGTCGTGGGTATCATACCCGCC
CGTTTCGCTTCTTCTCGCTTCGAGGGCAAACCCCTTGTTAATATCCTCGG
TAAACCTATGATCCAGAGAACATGGGAAAGGTCCAAACTGGCAACCACAT
TGGATCACCTGGTTGTGGCAACGGATGATGAGAAGATTGCAGAATGCTGC
CAACAATTTGGTGCTGATGTGATAATGACTTCAGAATCTTGCCGAAATGG
TACTGAAAGATGCAACGAAGCATTACAAAAGCTGGAGAAGAAGTACGATA
TTGTTGTCAATATTCAGGGAGATGAACCTCTTATTGAACCAGAGATTATA
GATGGTGTTGTGAAAGCTCTGCAGGCAGCCCCAGATGCAGTGTTCAGTAC
TGCTGTGACATCTTTAAAACCTGAAGATGCATTTGATCCAAATCGGGTGA
AATGTGTTGTGGATAATCATGGTTATGCCATATATT
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