CX300535

Overview
NameCX300535
Unique NameCX300535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_DEBHA (Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 240
            MIEV+ NDRLG K++VKC   DTIGDLKK+++ Q GT  +KI ++K Y +YKDHITL DYE+H+G   ELYYS
Sbjct:    1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDYEVHNGFNFELYYS 73          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_CANGA (Ubiquitin-like modifier HUB1 OS=Candida glabrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 240
            MIEV++NDRLG K+RVKC EDDT+GD KK+++ Q G +  KI +QK  ++ KDHITL DYE+HD   LELYYS
Sbjct:    1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDYEVHDNTNLELYYS 73          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_YEAST (Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae GN=HUB1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEVV+NDRLG KVRVKC  +D++GD KK+++ Q GT+ +KI +QK  ++ KDHI+L+DYE+HD   LELYY
Sbjct:    1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 72          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_KLULA (Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis GN=HUB1 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGT-RADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEV++NDRLG KV VKC  +DT+GD KK+++ Q GT  A KI +QK  ++ KDHITL+DYE+HDG  LELYY
Sbjct:    1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLEDYEVHDGTNLELYY 73          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: UBL5_DICDI (Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.210e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKD--------------YEIHDGMGLELYYS 240
            MIEVV NDRLG KVRVK N DDTIGDLKK+++AQ G +A+KIR+QK Y+I+KD     +              YEIHDG GLELYY+
Sbjct:    1 MIEVVCNDRLGNKVRVKVNSDDTIGDLKKVLSAQIGIKAEKIRLQKSYSIFKDRNNNNNYNNYNNNNNNYYYYYEIHDGDGLELYYN 87          
BLAST of CX300535 vs. ExPASy Swiss-Prot
Match: HUB1_ASHGO (Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   22 MIEVVLNDRLGMKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 237
            MIEV++NDRLG K+RVKC   D++GDLKK++A Q GT   K+ + K     KDHI+L DYE+HDG  LELYY
Sbjct:    1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDYEVHDGTYLELYY 72          
The following BLAST results are available for this feature:
BLAST of CX300535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HUB1_DEBHA4.417e-2161.64Ubiquitin-like modifier HUB1 OS=Debaryomyces hanse... [more]
HUB1_CANGA2.863e-2061.64Ubiquitin-like modifier HUB1 OS=Candida glabrata G... [more]
HUB1_YEAST5.399e-1959.72Ubiquitin-like modifier HUB1 OS=Saccharomyces cere... [more]
HUB1_KLULA5.399e-1961.64Ubiquitin-like modifier HUB1 OS=Kluyveromyces lact... [more]
UBL5_DICDI9.210e-1957.47Ubiquitin-like protein 5 OS=Dictyostelium discoide... [more]
HUB1_ASHGO2.268e-1758.33Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionC07011D03SK SaltLeaf1 Citrus clementina cDNA clone C07011D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300535 ID=CX300535; Name=CX300535; organism=Citrus clementina; type=EST; length=637bp
AAATCAAAACAGGAGACAAAGATGATTGAGGTGGTGCTGAACGACAGGCT
CGGGATGAAGGTGCGCGTGAAGTGCAACGAAGACGACACCATAGGCGACT
TGAAGAAGCTGGTGGCGGCTCAGACCGGGACTCGAGCCGACAAGATTCGG
ATTCAGAAGTGGTACAACATCTACAAGGACCACATCACTCTCAAGGACTA
CGAGATTCACGACGGCATGGGCCTTGAACTCTATTACAGCTAAATCCACC
GTTAAATATATATGCTGCTGCAAGCAGTCAATACTACTAGGAACCATATG
CTATAATAAGCAAGGGGTATTGGAAGACTGCGGCAGGGCCAACTTTACTA
ATACTGTCTTGTAAGAAAAAAATTTGTGAAGACTCGTAAAAACTTATTTG
TGGTTATGTAACATATCTGGGATCTGGACTTACTCTCCATTTTGAATGGT
GTTTAGATCTTTTATCAAGGTATTGAGGTACCACATGCTTGTCAGTCCAT
TAGGCTGATAGAATTTTGTGAATACCTTGGCTAAGTGTGTGCCATCTTTC
TTGCATAAAAATGGTAGATGATCCATTAGTGAGTTGCTGTGTATGTCATC
TTGTATATCAACTACAAAACTTGTGTGGTTGATTTCT
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