CX300536

Overview
NameCX300536
Unique NameCX300536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300536 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42
Identity = 85/147 (57.82%), Postives = 99/147 (67.35%), Query Frame = 2
Query:    2 LDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 442
            L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK L+S     ++S  F+EDWV+IG PAK KV TE    PF DQCT  EKEAVNVSL NLLTYPFV+EG+ N TL L GG+YDFV+G FE W
Sbjct:  176 LGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 322          
BLAST of CX300536 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 2
Query:   11 QPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKGLMSFTFDGNN--STDFIEDWVKIGIPAKSKVLTE-HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 427
            QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS CG   G +    D      T +I +W++   P K ++         F  +    E+    + L+NLL+Y F++E ++N  L + G +Y    G
Sbjct:   52 QPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGAC-GSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNELKIFGWHYIIETG 193          
The following BLAST results are available for this feature:
BLAST of CX300536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CAHC_HORVU2.191e-4257.82Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_HELPJ5.820e-1127.97Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC07011D05SK SaltLeaf1 Citrus clementina cDNA clone C07011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300536 ID=CX300536; Name=CX300536; organism=Citrus clementina; type=EST; length=664bp
GTTGGATTTTCAACCTGGGGAAGCTTTCGTGGTTCGCAATGTTGCTAACA
TTGTTCCACCCTATGATCAGACTAAATATGCTGGAGTTGGAGCTGCTGTC
GAGTATGCAGTTTTGCATCTCAAGGTTTCAAACATTGTGGTCATTGGGCA
CAGCGCCTGTGGTGGCATCAAAGGACTCATGTCTTTCACATTTGATGGAA
ACAACTCCACCGATTTCATTGAAGACTGGGTGAAAATTGGCATCCCTGCC
AAGTCTAAGGTGTTAACAGAGCATGGTGACAAGCCTTTTGGAGACCAATG
CACATACTGTGAAAAGGAGGCGGTGAATGTGTCCCTCAGTAATCTGCTAA
CGTATCCATTTGTGAGAGAAGGCTTGGTGAACAAAACTCTGGCACTCAAG
GGTGGTTACTATGATTTCGTTAATGGATCATTCGAGCTCTGGGGTCTCGA
CTTTAGCCTTTCTCCTCCACTCTCCGTATGAACATCAACCGATATATGAT
ATCAGTGACCTCATCTTTGTTCTCTTTATTACCATGTGATCTACTTTTAT
CTCCCTTTCTTCCCATGTGTACTCTTGTATGTTTTATTGAGCTGCAATTT
ACAATAAACTTACGATGAACATCGGCTTCTACTTCTTTTAACATAAATGG
ACAGTGAAATTTCC
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