CX300538

Overview
NameCX300538
Unique NameCX300538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDA2_ORYSJ (Phospholipase D alpha 2 OS=Oryza sativa subsp. japonica GN=PLD2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.811e-29
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 2
Query:    2 YEHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEHLGML D FL PE  ECV++VN++A++YWDLY+S+ L  DLPGHLL YP+ V+ EG VTELPG +FFPDT+A V+GTK + +PP LTT
Sbjct:  729 YEHLGMLHDNFLNPESLECVQRVNKMADKYWDLYASDELNDDLPGHLLTYPVRVTKEGTVTELPGAKFFPDTQAPVIGTKGN-LPPFLTT 817          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDZ1_ARATH (Phospholipase D zeta OS=Arabidopsis thaliana GN=PLDZETA PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.347e-22
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEH--DLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            EHL +  + F  PE  EC++ VN  A+  W LYS++      DLPGHLL YPI +   G+VT L GTEFFPDT A+V+G KS+Y+PP+LT+
Sbjct:  730 EHLRVTTNAFQCPESEECIRMVNATADELWGLYSAQEYPRNDDLPGHLLSYPISIGSNGEVTNLAGTEFFPDTNAKVVGEKSNYLPPILTS 820          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDB1_ARATH (Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 238
            EH+  LDD F QPE  ECV+KV  + ER W  +++E +  D+ GHLL+YP+ V  +G V  LPG+E FPD    ++GT
Sbjct:  881 EHMANLDDCFTQPESIECVRKVRTMGERNWKQFAAEEVS-DMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGT 957          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDG3_ARATH (Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 238
            EHLG L+  F +PE  ECV++V Q++E  W  Y++E +  ++PGHLL+YP+ V   G V+ LPG E FPD   +++G+
Sbjct:  780 EHLGFLEQEFEEPENMECVRRVRQLSELNWRQYAAEEVT-EMPGHLLKYPVQVDRTGKVSSLPGYETFPDLGGKIIGS 856          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDB2_ARATH (Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 238
            EH+ +LDD F++PE   CV+KV  +AE  W+ + SE +  ++ GHL++YP+ V  +G V  LPG+E FPD    V+G+
Sbjct:  829 EHMALLDDCFVEPESLGCVRKVRTVAEENWEQFRSEEVS-EMRGHLMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVGS 905          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDG2_ARATH (Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 238
            EHLG L+  F +PE  ECV++V Q++E  W  Y++E +  ++ GHLL+YP+ V   G V+ LPG E FPD   +++G+
Sbjct:  770 EHLGFLEQEFEEPENMECVRRVRQLSELNWGQYAAEEVT-EMSGHLLKYPVQVDKTGKVSSLPGCETFPDLGGKIIGS 846          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDD1_ARATH (Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            EHLG   D F++P   EC+KKVN I+E  W  +       +L GHL++YP+ V  +G V+ LP  E FPD   +++G  S  +P  LTT
Sbjct:  781 EHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFS-ELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDG1_ARATH (Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.706e-14
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 EHLGMLDDTFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 238
            EHLG L+  F +PE  ECV++V Q++E  W  Y++E +  ++ GHLL+YP+ V   G V+ LPG E FPD   +++G+
Sbjct:  772 EHLGFLEQGFEEPENMECVRRVRQLSELNWRQYAAEEVT-EMSGHLLKYPVQVDRTGKVSSLPGCETFPDLGGKIIGS 848          
BLAST of CX300538 vs. ExPASy Swiss-Prot
Match: PLDE1_ARATH (Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 2
Query:    2 YEHLG---MLDD-TFLQPECSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 271
            YEH G     DD +  +PE  ECV+ +  I E+ W++YS + +   L  HL+ YPI V+G+G V E+ G   FPDTK  V G +S   PPVLTT
Sbjct:  670 YEHTGGKITADDLSSSEPESLECVRGLRTIGEQMWEIYSGDKVVDMLGIHLVAYPISVTGDGAVEEV-GDGCFPDTKTLVKGKRSKMFPPVLTT 762          
The following BLAST results are available for this feature:
BLAST of CX300538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PLDA2_ORYSJ2.811e-2964.44Phospholipase D alpha 2 OS=Oryza sativa subsp. jap... [more]
PLDZ1_ARATH4.347e-2251.65Phospholipase D zeta OS=Arabidopsis thaliana GN=PL... [more]
PLDB1_ARATH3.017e-1547.44Phospholipase D beta 1 OS=Arabidopsis thaliana GN=... [more]
PLDG3_ARATH1.147e-1444.87Phospholipase D gamma 3 OS=Arabidopsis thaliana GN... [more]
PLDB2_ARATH3.336e-1443.59Phospholipase D beta 2 OS=Arabidopsis thaliana GN=... [more]
PLDG2_ARATH5.690e-1443.59Phospholipase D gamma 2 OS=Arabidopsis thaliana GN... [more]
PLDD1_ARATH5.690e-1441.57Phospholipase D delta OS=Arabidopsis thaliana GN=P... [more]
PLDG1_ARATH9.706e-1443.59Phospholipase D gamma 1 OS=Arabidopsis thaliana GN... [more]
PLDE1_ARATH4.817e-1344.68Phospholipase D epsilon OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC07011D07SK SaltLeaf1 Citrus clementina cDNA clone C07011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300538 ID=CX300538; Name=CX300538; organism=Citrus clementina; type=EST; length=518bp
GTACGAGCACCTAGGCATGCTCGATGACACCTTCCTCCAGCCAGAATGTA
GCGAATGTGTTAAGAAGGTTAACCAGATTGCCGAACGGTATTGGGACCTG
TACTCCAGTGAGTCTCTTGAGCATGACTTGCCCGGTCACTTGCTCCGCTA
CCCCATTGGTGTTTCTGGTGAAGGAGATGTCACGGAGTTGCCAGGAACCG
AGTTCTTCCCCGACACCAAGGCTCGTGTTCTCGGTACCAAATCGGATTAT
ATGCCCCCAGTCCTGACCACCTGATGCTCTCCAGAGGGTGCCAAAAATAA
TTTCGTAGTTGCGAACTACCGGTTATGGTAGTATAGCAAATAATAAATGA
TGTGTATTAAAACCAACAGGTGTGGTATTGTTTTTCTGCTTTGGTTCAGA
GATGTGGTGTGATTTGGTGATATACTGACGGGAAACTTATTAAGTCTGTT
TATTTGTGCATTACGTTTAAATTGGTCCTAAATTTTACTTCTGTTAATCT
CTAAAAAAAAAAAAAAAA
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