CX300541 | Citrus Genome Database

Overview


Name	CX300541
Unique Name	CX300541
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	419

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA4_SOYBN (Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 4.373e-12
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RSWAPDRQ+RF  RWVDALSDP
Sbjct:  436 RSWAPDRQDRFARRWVDALSDP 457

HSP 2 Score: 45.0542 bits (105), Expect = 4.373e-12
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            RVTHEIR +WISYWSQA +SLG ++
Sbjct:  458 RVTHEIRSVWISYWSQADRSLGQKI 482

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA2_SOLLC (Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 41.9726 bits (97), Expect = 1.038e-11
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RS+ PDRQERFI RWV+ALSDP
Sbjct:  436 RSFTPDRQERFIRRWVEALSDP 457

HSP 2 Score: 41.9726 bits (97), Expect = 1.038e-11
Identity = 17/25 (68.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            R+T+EIR IWI+YWSQA KSLG ++
Sbjct:  458 RITYEIRSIWITYWSQADKSLGQKL 482

HSP 3 Score: 25.0238 bits (53), Expect = 1.038e-11
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2

Query:  140 KLASRLNVRPNI 175
            KLASRLNVRP+I
Sbjct:  481 KLASRLNVRPSI 492

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA_PEA (Catalase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 1.341e-11
Identity = 17/25 (68.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            R+THEIR IW+SYWSQA +SLG ++
Sbjct:  460 RITHEIRSIWVSYWSQADRSLGQKL 484

HSP 2 Score: 42.743 bits (99), Expect = 1.341e-11
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSD 65
            R+WAPDRQERF+ RWV+ALSD
Sbjct:  436 RTWAPDRQERFLRRWVEALSD 456

HSP 3 Score: 21.9422 bits (45), Expect = 1.341e-11
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2

Query:  140 KLASRLNVRPNI 175
            KLAS LN+RP+I
Sbjct:  483 KLASHLNMRPSI 494

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA1_NICPL (Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1)

HSP 1 Score: 43.1282 bits (100), Expect = 1.342e-11
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            R+T+EIR IWISYWSQA KSLG ++
Sbjct:  451 RITYEIRSIWISYWSQADKSLGQKL 475

HSP 2 Score: 40.4318 bits (93), Expect = 1.342e-11
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RS+ PDRQERFI RWV+ LSDP
Sbjct:  429 RSFTPDRQERFIRRWVETLSDP 450

HSP 3 Score: 25.0238 bits (53), Expect = 1.342e-11
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2

Query:  140 KLASRLNVRPNI 175
            KLASRLNVRP+I
Sbjct:  474 KLASRLNVRPSI 485

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA3_SOYBN (Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 1.613e-11
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            RVTHEIR IWISYWSQA +SLG ++
Sbjct:  458 RVTHEIRSIWISYWSQADRSLGQKI 482

HSP 2 Score: 43.5134 bits (101), Expect = 1.613e-11
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RSW  DRQERF+ RWVDALSDP
Sbjct:  436 RSWPSDRQERFVRRWVDALSDP 457

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA1_SOYBN (Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 1.613e-11
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            RVTHEIR IWISYWSQA +SLG ++
Sbjct:  458 RVTHEIRSIWISYWSQADRSLGQKI 482

HSP 2 Score: 43.5134 bits (101), Expect = 1.613e-11
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RSW  DRQERF+ RWVDALSDP
Sbjct:  436 RSWPSDRQERFVRRWVDALSDP 457

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA2_CUCPE (Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 SV=1)

HSP 1 Score: 43.5134 bits (101), Expect = 4.823e-11
Identity = 16/25 (64.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            +VTHE+R+IWISYW+QA +SLG ++
Sbjct:  458 KVTHEVRNIWISYWTQADRSLGQKI 482

HSP 2 Score: 40.4318 bits (93), Expect = 4.823e-11
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSD 65
            RSWAPDRQERF+ R+V+ALSD
Sbjct:  436 RSWAPDRQERFVNRFVEALSD 456

HSP 3 Score: 22.7126 bits (47), Expect = 4.823e-11
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2

Query:  140 KLASRLNVRPNI 175
            K+ASR+N RPN+
Sbjct:  481 KIASRMNARPNM 492

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA1_ARATH (Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=3)

HSP 1 Score: 45.8246 bits (107), Expect = 6.228e-11
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            RVTHEIR IWISYWSQA KSLG ++
Sbjct:  458 RVTHEIRSIWISYWSQADKSLGQKL 482

HSP 2 Score: 36.1946 bits (82), Expect = 6.228e-11
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RSW  DRQERF+ R+V+ALS+P
Sbjct:  436 RSWDSDRQERFVKRFVEALSEP 457

HSP 3 Score: 24.2534 bits (51), Expect = 6.228e-11
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  140 KLASRLNVRPN 172
            KLA+RLNVRPN
Sbjct:  481 KLATRLNVRPN 491

[Close]

BLAST of CX300541 vs. ExPASy Swiss-Prot
Match: CATA_AVIMR (Catalase OS=Avicennia marina PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.715e-11
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 3

Query:    3 RSWAPDRQERFICRWVDALSDP 68
            RSWAPDRQERF+ RWVDALSDP
Sbjct:  436 RSWAPDRQERFLRRWVDALSDP 457

HSP 2 Score: 38.5058 bits (88), Expect = 7.715e-11
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1

Query:   70 RVTHEIRHIWISYWSQACKSLGHEV 144
            R+T EIR IW+SYWSQA KS G ++
Sbjct:  458 RLTLEIRSIWVSYWSQADKSFGQKL 482

The following BLAST results are available for this feature:

BLAST of CX300541 vs. ExPASy Swiss-Prot

BLAST of CX300541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
CATA4_SOYBN	4.373e-12	86.36	Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1	[more]
CATA2_SOLLC	1.038e-11	81.82	Catalase isozyme 2 OS=Solanum lycopersicum GN=CAT2...	[more]
CATA_PEA	1.341e-11	68.00	Catalase OS=Pisum sativum PE=2 SV=1	[more]
CATA1_NICPL	1.342e-11	72.00	Catalase isozyme 1 (Fragment) OS=Nicotiana plumbag...	[more]
CATA3_SOYBN	1.613e-11	76.00	Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1	[more]
CATA1_SOYBN	1.613e-11	76.00	Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1	[more]
CATA2_CUCPE	4.823e-11	64.00	Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 ...	[more]
CATA1_ARATH	6.228e-11	80.00	Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV...	[more]
CATA_AVIMR	7.715e-11	90.91	Catalase OS=Avicennia marina PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C07011D11SK SaltLeaf1 Citrus clementina cDNA clone C07011D11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300541 ID=CX300541; Name=CX300541; organism=Citrus clementina; type=EST; length=419bp
ACCGATCTTGGGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTT
GATGCTTTATCTGATCCAACGCGTCACCCATGAGATCCGCCACATATGGA
TCTCATACTGGTCTCAGGCTTGCAAGTCTCTGGGTCATGAAGTTGGCATC
TCGTCTGAATGTGAGGCCTAACATTTAATGGTGATGCGGAGCTGAGTGAT
TTAGAAAGAGTTAGCAAGGAGTAAACACAGAGGACGTCAGCAGTTTAAGG
AATGCGAATTCGTTTTCGGGTGGTGTGTTATTTTGTAATACTAAAAAAAA
CATGTTGGTCCTGTAATTCATAAACATGATGTTCCTTAAAATAAATGCTG
GTTGTACGCTCAAAATTTGTATAAAGTACAATCATATTAGTACTTTTCTG
TTAAAAAAAATAAAAAAAA