CX300542

Overview
NameCX300542
Unique NameCX300542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300542 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 59/222 (26.58%), Postives = 96/222 (43.24%), Query Frame = 1 
Query:   10 QLKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPDQ--RSGKVELQYQHEYAGISTGIGFTAN-PIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALAL 657
            ++K+  +T   K +T++ LFT + V D+   GLK S+     P    ++GK ++ Y HE     + +      P+              G   +FDT     T  N  L YT  D +    +ND G   + S +   S   +  VG +L+ +  ++     IG ++ LD   SV+A+VNN  +     Q + R     T+S  VD +       KIG+ L L
Sbjct:   62 KVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLD--VGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLEL 280
The following BLAST results are available for this feature:
BLAST of CX300542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VDAC_DROME6.198e-1126.58Voltage-dependent anion-selective channel OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionC07011D12SK SaltLeaf1 Citrus clementina cDNA clone C07011D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300542 ID=CX300542; Name=CX300542; organism=Citrus clementina; type=EST; length=684bp
GTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGTTGA
TACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTCCTG
GACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGCAAG
GTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGGCATTGG
ATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGAAACAATT
CTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAACTTC
ACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCATTGCTTC
CCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTACTACCACA
TTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGACCCATAGC
TTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAGCATGCTCTTGA
TCCTTTGACCTCGGTGAAGGCCCGTGTGAACAACTATGGCAGGGCAAGTG
CTCTTATCCAGCACGAGTGGCGTCCCAAATCTCTATTTACTATCTCAGGA
GAGGTAGACACCAGGGCCATTGAAAAGAGTGCTAAAATTGGGCTGGCGTT
AGCTCTCAGCCATAGGCTAAGCATTAATCTTGGC
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