CX300544

Overview
NameCX300544
Unique NameCX300544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:340..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.164e-49
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = -2
Query:  311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640
            LAN H  G+R L +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF  W ETDFRTGE PWW
Sbjct:   70 LAN-HNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178          

HSP 2 Score: 30.0314 bits (66), Expect = 1.164e-49
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G TAKDA+GNDII +++L
Sbjct:   53 GVTAKDALGNDIIVSEFL 70          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.361e-49
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA + E+ K+ F  WTETDFRT EAPWWA
Sbjct:   72 THTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180          

HSP 2 Score: 30.4166 bits (67), Expect = 3.361e-49
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = -3
Query:  622 GTTAKDAIGNDIIAADWL-TRTA 687
            G  AKDA+GNDII +D+L T TA
Sbjct:   53 GVIAKDALGNDIIVSDYLQTHTA 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.649e-48
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = -2
Query:  311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628
            H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW
Sbjct:   73 HPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          

HSP 2 Score: 28.1054 bits (61), Expect = 3.649e-48
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  628 GTTAKDAIGNDIIAADWLTR 687
            G  AKDA+GNDI  +D+L +
Sbjct:   53 GVVAKDALGNDISVSDFLAK 72          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.369e-47
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = -2
Query:  311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 631
            TH PGDR L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G V F PWTETDFRT  APWW
Sbjct:  131 THKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          

HSP 2 Score: 27.7202 bits (60), Expect = 1.369e-47
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKDA+GND+  + WL
Sbjct:  112 GQAAKDALGNDVKVSSWL 129          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.332e-47
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V  PWTETDFRTGE PWW+
Sbjct:   72 SHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179          

HSP 2 Score: 26.5646 bits (57), Expect = 2.332e-47
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GTTAKD +GND+  + +L    +G
Sbjct:   53 GTTAKDELGNDVSVSKFLESHNVG 76          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 3.961e-47
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = -2
Query:  311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640
            LAN H  GDR L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   69 LAN-HSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          

HSP 2 Score: 28.4906 bits (62), Expect = 3.961e-47
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN + A+ WL   + G
Sbjct:   52 GTSAKDELGNSVTASGWLANHSDG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.961e-47
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = -2
Query:  311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640
            LAN H  GDR L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   69 LAN-HSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          

HSP 2 Score: 28.4906 bits (62), Expect = 3.961e-47
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN + A+ WL   + G
Sbjct:   52 GTSAKDELGNSVTASGWLANHSDG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.728e-47
Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V   WTETDFRT E PWWA
Sbjct:   72 SHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          

HSP 2 Score: 26.5646 bits (57), Expect = 6.728e-47
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G TAKDA+GND+   ++L
Sbjct:   53 GVTAKDALGNDVKVTEFL 70          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 8.768e-47
Identity = 77/109 (70.64%), Postives = 89/109 (81.65%), Query Frame = -2
Query:  308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634
            +TH  GDR L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+TDFRTGE PWWA
Sbjct:   70 STHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          

HSP 2 Score: 28.1054 bits (61), Expect = 8.768e-47
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN + A+ WL+    G
Sbjct:   52 GTSAKDELGNAVTASGWLSTHPAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.143e-46
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = -2
Query:  308 GDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 619
            GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APWWA
Sbjct:   76 GDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          

HSP 2 Score: 26.1794 bits (56), Expect = 1.143e-46
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GTTAKD +GND+  + +L     G
Sbjct:   53 GTTAKDELGNDVSLSKFLENRNAG 76          
The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_TRIEI1.164e-4973.64Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRI_SYNP23.361e-4974.31Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_CYAP43.649e-4872.64Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRIA_CYAPA1.369e-4773.15Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRIA_ANAVT2.332e-4772.22Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_PROMM3.961e-4772.73Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM33.961e-4772.73Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIB_SYNY36.728e-4772.48Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNPW8.768e-4770.64Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP1.143e-4674.04Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]

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Properties
Property NameValue
Genbank descriptionC07011E03SK SaltLeaf1 Citrus clementina cDNA clone C07011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTAATAAATGATAAAAA
CTTATATCCAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATT
TTTGAGATACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAA
GATTACAAGATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCT
TCATTCTGATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAA
AGCAAACCGACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAAC
AAGTTTAAGCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTC
CATGGAACGAAGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGC
CAATGACAATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATT
GGGATCCGTGGCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGC
ACCACACATCCAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAG
TGTTTTGTCTTTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTT
CGGTGAGGGNTCGGTCCCCAGGGCCGTGCGTGTTAGCCAATCAGCGGCAA
TGATGTCATTGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACT
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