CX300544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.164e-49 Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = -2 Query: 311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640 LAN H G+R L +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF W ETDFRTGE PWW Sbjct: 70 LAN-HNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178 HSP 2 Score: 30.0314 bits (66), Expect = 1.164e-49 Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G TAKDA+GNDII +++L Sbjct: 53 GVTAKDALGNDIIVSEFL 70
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 3.361e-49 Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+ G+VVRGPAPLSLAL HA + E+ K+ F WTETDFRT EAPWWA Sbjct: 72 THTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180 HSP 2 Score: 30.4166 bits (67), Expect = 3.361e-49 Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = -3 Query: 622 GTTAKDAIGNDIIAADWL-TRTA 687 G AKDA+GNDII +D+L T TA Sbjct: 53 GVIAKDALGNDIIVSDYLQTHTA 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.649e-48 Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = -2 Query: 311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 628 H DR L +GLKGDPTY+VV+ D T+ YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW Sbjct: 73 HPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178 HSP 2 Score: 28.1054 bits (61), Expect = 3.649e-48 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 628 GTTAKDAIGNDIIAADWLTR 687 G AKDA+GNDI +D+L + Sbjct: 53 GVVAKDALGNDISVSDFLAK 72
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.369e-47 Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = -2 Query: 311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 631 TH PGDR L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+ G+VVRGPAPLSLALAH ++ E+G V F PWTETDFRT APWW Sbjct: 131 THKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238 HSP 2 Score: 27.7202 bits (60), Expect = 1.369e-47 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKDA+GND+ + WL Sbjct: 112 GQAAKDALGNDVKVSSWL 129
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.332e-47 Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 +H GDR L +GLKGDPTY+VVE + + YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+ G+VVRGPAP SLAL+HA EN K+V PWTETDFRTGE PWW+ Sbjct: 72 SHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179 HSP 2 Score: 26.5646 bits (57), Expect = 2.332e-47 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GTTAKD +GND+ + +L +G Sbjct: 53 GTTAKDELGNDVSVSKFLESHNVG 76
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 3.961e-47 Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = -2 Query: 311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640 LAN H GDR L +GLKGDPTYL+VE D + SYGINA+CTHLGCVVPWNS NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+ +EN V WTETDFRTGE PWW Sbjct: 69 LAN-HSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177 HSP 2 Score: 28.4906 bits (62), Expect = 3.961e-47 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + A+ WL + G Sbjct: 52 GTSAKDELGNSVTASGWLANHSDG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.961e-47 Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = -2 Query: 311 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 640 LAN H GDR L +GLKGDPTYL+VE D + SYGINA+CTHLGCVVPWNS NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+ +EN V WTETDFRTGE PWW Sbjct: 69 LAN-HSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177 HSP 2 Score: 28.4906 bits (62), Expect = 3.961e-47 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + A+ WL + G Sbjct: 52 GTSAKDELGNSVTASGWLANHSDG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 6.728e-47 Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 +H GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V WTETDFRT E PWWA Sbjct: 72 SHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180 HSP 2 Score: 26.5646 bits (57), Expect = 6.728e-47 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G TAKDA+GND+ ++L Sbjct: 53 GVTAKDALGNDVKVTEFL 70
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 8.768e-47 Identity = 77/109 (70.64%), Postives = 89/109 (81.65%), Query Frame = -2 Query: 308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634 +TH GDR L +GLKGDPTYL+VE D + SYGINA+CTHLGCVVPWNS NKF+CPCHGSQY+ G+VVRGPAPLSLALA+ ++EN V WT+TDFRTGE PWWA Sbjct: 70 STHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178 HSP 2 Score: 28.1054 bits (61), Expect = 8.768e-47 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + A+ WL+ G Sbjct: 52 GTSAKDELGNAVTASGWLSTHPAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.143e-46 Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 308 GDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 619 GDR L +GLKGDPTY+VVE + + YGINA+CTHLGCVVPWN AENKF CPCHGSQY+ G+VVRGPAPLSLALAHAN + K++ PWTETDFRTG+APWWA Sbjct: 76 GDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179 HSP 2 Score: 26.1794 bits (56), Expect = 1.143e-46 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GTTAKD +GND+ + +L G Sbjct: 53 GTTAKDELGNDVSLSKFLENRNAG 76 The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bpback to top |