CX300544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 7.299e-46 Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = -2 Query: 308 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628 H GDR L +GLKGDPTYL+V+ ++ YGINA+CTHLGCVVPWN+ NKF+CPCHGSQY+ G+VVRGPAPLSLALAH N+EN V W+ETDFRT E PWWA Sbjct: 72 HKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178 HSP 2 Score: 31.9574 bits (71), Expect = 7.299e-46 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 GTTAKD +GND+ A+ WL Sbjct: 52 GTTAKDELGNDVTASGWL 69
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.512e-46 Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = -2 Query: 308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634 ++H GDR L +GLKGDPTYL+VE + SYGINA+CTHLGCVVPWNS NKF+CPCHGSQY+ G+VVRGPAPLSLALA+ +++N V WTETDFRTGE PWW+ Sbjct: 70 SSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178 HSP 2 Score: 30.0314 bits (66), Expect = 9.512e-46 Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + A+ WL+ A G Sbjct: 52 GTSAKDELGNSVTASGWLSSHAEG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.236e-45 Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = -2 Query: 311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 631 T PGDR L +GLKGD TYL+V++D TL YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+ G+VVRGPAPLSLALAH N+ E+G V F PWTETDFRT APWW Sbjct: 133 TXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240 HSP 2 Score: 25.7942 bits (55), Expect = 1.236e-45 Identity = 11/18 (61.11%), Postives = 11/18 (61.11%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKDA GNDI WL Sbjct: 114 GQAAKDAAGNDIKVEKWL 131
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.103e-45 Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L++GLKGDPTYL+V D T+ YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F W+ETDFRTG PWWA Sbjct: 98 THQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206 HSP 2 Score: 27.7202 bits (60), Expect = 2.103e-45 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKDA+GNDI A WL Sbjct: 79 GQAAKDALGNDIKANAWL 96
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.105e-45 Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = -2 Query: 311 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 634 + H GDR L +GLKGDPTYL+VE + + ++GINA+CTHLGCVVPWNS NK+ICPCHGSQY+ G+VVRGPAPLSLALAH ++E+ KV W ETDFRTGE PWW Sbjct: 70 SNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177 HSP 2 Score: 29.261 bits (64), Expect = 2.105e-45 Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN I A+ WL+ G Sbjct: 52 GTSAKDELGNPITASGWLSNHPAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.744e-45 Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = -2 Query: 311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 628 H PGDR L +G+KGDPTY++V +D +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL A + E+ K+VF PWTE DFRTG+ PWW Sbjct: 73 HLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179 HSP 2 Score: 26.5646 bits (57), Expect = 2.744e-45 Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 628 GTTAKDAIGNDIIAADWLTR 687 G AKDA+GNDI +++L + Sbjct: 53 GAVAKDALGNDIKVSEYLAK 72
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.744e-45 Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = -2 Query: 311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 628 H PGDR L +G+KGDPTY++V +D +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL A + E+ K+VF PWTE DFRTG+ PWW Sbjct: 73 HLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179 HSP 2 Score: 26.5646 bits (57), Expect = 2.744e-45 Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 628 GTTAKDAIGNDIIAADWLTR 687 G AKDA+GNDI +++L + Sbjct: 53 GAVAKDALGNDIKVSEYLAK 72
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.744e-45 Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = -2 Query: 308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634 + H GDR L +GLKGDPTYL+V+ D + ++GINA+CTHLGCVVPWNS NK+ICPCHGSQY+ G+VVRGPAPLSLAL H +I++ V+ WTETDFRTG+ PWWA Sbjct: 70 SNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178 HSP 2 Score: 29.6462 bits (65), Expect = 2.744e-45 Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GTTAKD +GN + A WL+ G Sbjct: 52 GTTAKDELGNAVTATGWLSNHPAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 6.073e-45 Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = -2 Query: 308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634 +TH GDR L +GLKGDPTYL+VE + SYGINA+CTHLGCVVPWNS NKF+CPCHGSQY+ G+VVRGPAPLSLALA+ ++E+ V W+ETDFRTG+ PWWA Sbjct: 70 STHPEGDRSLVQGLKGDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178 HSP 2 Score: 28.4906 bits (62), Expect = 6.073e-45 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = -3 Query: 631 GTTAKDAIGNDIIAADWLT 687 GTTAKD +GN + A WL+ Sbjct: 52 GTTAKDELGNVVTATGWLS 70
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.474e-43 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +IE+ V+ W+ETDFRT E PWWA Sbjct: 71 THQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 26.1794 bits (56), Expect = 2.474e-43 Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN I WL G Sbjct: 52 GTSAKDELGNPITKTGWLATHQAG 75 The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bpback to top |