CX300544

Overview
NameCX300544
Unique NameCX300544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:340..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.299e-46
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  308 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 628
            H  GDR L +GLKGDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+EN  V    W+ETDFRT E PWWA
Sbjct:   72 HKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178          

HSP 2 Score: 31.9574 bits (71), Expect = 7.299e-46
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            GTTAKD +GND+ A+ WL
Sbjct:   52 GTTAKDELGNDVTASGWL 69          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.512e-46
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634
            ++H  GDR L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++N  V    WTETDFRTGE PWW+
Sbjct:   70 SSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178          

HSP 2 Score: 30.0314 bits (66), Expect = 9.512e-46
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN + A+ WL+  A G
Sbjct:   52 GTSAKDELGNSVTASGWLSSHAEG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.236e-45
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = -2
Query:  311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 631
            T  PGDR L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G V F PWTETDFRT  APWW
Sbjct:  133 TXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          

HSP 2 Score: 25.7942 bits (55), Expect = 1.236e-45
Identity = 11/18 (61.11%), Postives = 11/18 (61.11%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKDA GNDI    WL
Sbjct:  114 GQAAKDAAGNDIKVEKWL 131          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.103e-45
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  W+ETDFRTG  PWWA
Sbjct:   98 THQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          

HSP 2 Score: 27.7202 bits (60), Expect = 2.103e-45
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = -3
Query:  634 GTTAKDAIGNDIIAADWL 687
            G  AKDA+GNDI A  WL
Sbjct:   79 GQAAKDALGNDIKANAWL 96          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.105e-45
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = -2
Query:  311 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 634
            + H  GDR L +GLKGDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH ++E+ KV    W ETDFRTGE PWW
Sbjct:   70 SNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          

HSP 2 Score: 29.261 bits (64), Expect = 2.105e-45
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN I A+ WL+    G
Sbjct:   52 GTSAKDELGNPITASGWLSNHPAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.744e-45
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = -2
Query:  311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 628
            H PGDR L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   73 HLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          

HSP 2 Score: 26.5646 bits (57), Expect = 2.744e-45
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  628 GTTAKDAIGNDIIAADWLTR 687
            G  AKDA+GNDI  +++L +
Sbjct:   53 GAVAKDALGNDIKVSEYLAK 72          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.744e-45
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = -2
Query:  311 HGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 628
            H PGDR L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   73 HLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          

HSP 2 Score: 26.5646 bits (57), Expect = 2.744e-45
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  628 GTTAKDAIGNDIIAADWLTR 687
            G  AKDA+GNDI  +++L +
Sbjct:   53 GAVAKDALGNDIKVSEYLAK 72          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.744e-45
Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634
            + H  GDR L +GLKGDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H +I++  V+   WTETDFRTG+ PWWA
Sbjct:   70 SNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          

HSP 2 Score: 29.6462 bits (65), Expect = 2.744e-45
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GTTAKD +GN + A  WL+    G
Sbjct:   52 GTTAKDELGNAVTATGWLSNHPAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 6.073e-45
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  308 NTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 634
            +TH  GDR L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++E+  V    W+ETDFRTG+ PWWA
Sbjct:   70 STHPEGDRSLVQGLKGDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178          

HSP 2 Score: 28.4906 bits (62), Expect = 6.073e-45
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = -3
Query:  631 GTTAKDAIGNDIIAADWLT 687
            GTTAKD +GN + A  WL+
Sbjct:   52 GTTAKDELGNVVTATGWLS 70          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.474e-43
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 26.1794 bits (56), Expect = 2.474e-43
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN I    WL     G
Sbjct:   52 GTSAKDELGNPITKTGWLATHQAG 75          
The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNR37.299e-4668.22Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS39.512e-4667.89Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIB_CYAPA1.236e-4572.22Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRIA_VOLCA2.103e-4571.56Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_PROM42.105e-4567.59Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_THEEB2.744e-4570.09Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNEL2.744e-4570.09Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMA2.744e-4566.06Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNS96.073e-4567.89Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMS2.474e-4366.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionC07011E03SK SaltLeaf1 Citrus clementina cDNA clone C07011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTAATAAATGATAAAAA
CTTATATCCAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATT
TTTGAGATACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAA
GATTACAAGATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCT
TCATTCTGATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAA
AGCAAACCGACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAAC
AAGTTTAAGCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTC
CATGGAACGAAGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGC
CAATGACAATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATT
GGGATCCGTGGCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGC
ACCACACATCCAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAG
TGTTTTGTCTTTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTT
CGGTGAGGGNTCGGTCCCCAGGGCCGTGCGTGTTAGCCAATCAGCGGCAA
TGATGTCATTGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACT
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