CX300544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.224e-43 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +IE+ V+ W+ETDFRT E PWWA Sbjct: 71 THQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 25.7942 bits (55), Expect = 3.224e-43 Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + WL G Sbjct: 52 GTSAKDELGNPVTKTGWLATHQAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.224e-43 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +IE+ V+ W+ETDFRT E PWWA Sbjct: 71 THQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 26.1794 bits (56), Expect = 3.224e-43 Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN I WL G Sbjct: 52 GTSAKDELGNPITKTGWLATHQAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.202e-43 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH +IE+ V+ W+ETDFRT E PWWA Sbjct: 71 THQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 26.1794 bits (56), Expect = 4.202e-43 Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN I WL G Sbjct: 52 GTSAKDELGNPITKTGWLATHQAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.298e-43 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 308 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 640 LAN H GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH ++++ V+ W+ETDFRT E PWWA Sbjct: 69 LAN-HQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 26.1794 bits (56), Expect = 9.298e-43 Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + WL G Sbjct: 52 GTSAKDELGNPVTKTGWLANHQAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.579e-42 Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 +H GDR L +GLKGDPTYL+V + + +G+NA+CTHLGCVVPW+S NKFICPCHGSQY+ G+VVRGPAPLSLALAH ++++ V+ W+ETDFRT E PWWA Sbjct: 71 SHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178 HSP 2 Score: 25.7942 bits (55), Expect = 1.579e-42 Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT+AKD +GN + WL G Sbjct: 52 GTSAKDELGNPVTKTGWLASHQAG 75
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40 Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 +H R L +G+KGDPTYL+V D TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY G VVRGPAP L LAH +NGK++ PWTETDFRTGE PWWA Sbjct: 144 SHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = -2 Query: 332 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 640 L TH DR L +GLKGDPTY+V++ +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY G+V+RGPAP SL L A ++ V F PW DFR Sbjct: 69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31 Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = -2 Query: 332 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 640 L TH DR L +GLKGDPTY+V++ +A+YG+NAVCTHLGCVVPWN EN F CPCHGSQY G+V+RGPAP SL L A ++ V F PW DFR Sbjct: 69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -2 Query: 311 PGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 622 PG R L GL GDPTYL+V++D +L S GI CTHLGC PWN + +F CPCHGS+Y+ G V RGPAPL L + + + ++ PWT+ D RTGE PWW Sbjct: 74 PGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28 Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = -2 Query: 311 PGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 622 P R L GL G+PTYL+V++D TL G+ CTHLGC PWN + +F CPCHGS+Y G VVRGPAPL L + + + ++ PWTETD RTG+ PWW Sbjct: 74 PQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177 The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bpback to top |