CX300544

Overview
NameCX300544
Unique NameCX300544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:340..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.224e-43
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 25.7942 bits (55), Expect = 3.224e-43
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN +    WL     G
Sbjct:   52 GTSAKDELGNPVTKTGWLATHQAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.224e-43
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 26.1794 bits (56), Expect = 3.224e-43
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN I    WL     G
Sbjct:   52 GTSAKDELGNPITKTGWLATHQAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.202e-43
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            TH  GDR L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 26.1794 bits (56), Expect = 4.202e-43
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN I    WL     G
Sbjct:   52 GTSAKDELGNPITKTGWLATHQAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.298e-43
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  308 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 640
            LAN H  GDR L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   69 LAN-HQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 26.1794 bits (56), Expect = 9.298e-43
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN +    WL     G
Sbjct:   52 GTSAKDELGNPVTKTGWLANHQAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.579e-42
Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            +H  GDR L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   71 SHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 25.7942 bits (55), Expect = 1.579e-42
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -3
Query:  616 GTTAKDAIGNDIIAADWLTRTALG 687
            GT+AKD +GN +    WL     G
Sbjct:   52 GTSAKDELGNPVTKTGWLASHQAG 75          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = -2
Query:  308 THGPGDRXLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631
            +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:  144 SHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  332 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 640
            L  TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  332 LANTHGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 640
            L  TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -2
Query:  311 PGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 622
            PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   74 PGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = -2
Query:  311 PGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 622
            P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:   74 PQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM93.224e-4366.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM23.224e-4366.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM04.202e-4366.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM59.298e-4364.86Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP1.579e-4263.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA6.575e-4066.06Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJA3.271e-3159.22Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJB7.287e-3159.22Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY31.795e-2952.88Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRIC_ANASP1.519e-2851.92Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC07011E03SK SaltLeaf1 Citrus clementina cDNA clone C07011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTAATAAATGATAAAAA
CTTATATCCAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATT
TTTGAGATACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAA
GATTACAAGATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCT
TCATTCTGATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAA
AGCAAACCGACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAAC
AAGTTTAAGCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTC
CATGGAACGAAGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGC
CAATGACAATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATT
GGGATCCGTGGCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGC
ACCACACATCCAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAG
TGTTTTGTCTTTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTT
CGGTGAGGGNTCGGTCCCCAGGGCCGTGCGTGTTAGCCAATCAGCGGCAA
TGATGTCATTGCCAATGGCATCCTTGGCAGTAGTACCACACCAGCACT
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