CX300545

Overview
NameCX300545
Unique NameCX300545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_LUPAL2.230e-3397.26Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS2.230e-3397.26Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU2.230e-3397.26Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN2.230e-3397.26Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN2.230e-3397.26Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA2.230e-3397.26Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA2.230e-3397.26Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA2.230e-3397.26Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA2.230e-3397.26Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF2.230e-3397.26Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07011E05SK SaltLeaf1 Citrus clementina cDNA clone C07011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bp
CTTCGTGAAAACCCTAACCGGAATGACCATAACTCTCGATGTCGAGAGCA
GCGACACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATT
CCCCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGG
GCGTACCTTGGCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGG
TGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCT
CGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCT
GCATCCCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATC
AGTTGAGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGAT
ATGTGCCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTC
TGAATAGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGAAG
TTGATTCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTAAAAAAAAAA
AAAAAAA
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