CX300545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18 Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I +D+E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K Sbjct: 1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17 Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 223 VKTLTG I +D++ +D I +K ++++KEGIPP QQRLIF GKQ+ D + ++Y+I+ S LHLVL LRGG+ Sbjct: 5 VKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16 Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I LD++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16 Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLT I +++E +DTI+ +K +I++KEGIPP QR+++ GKQL D T YN+++ S LHLVL LRGG Sbjct: 5 VKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15 Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL ALA K+N DKMICRKCY ARL PRA NCRK+KCGH+N +RPKKK+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14 Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I+++++ SD + ++K +++KEGIPP QQRLIF GKQ++D T+ D ++ + LHLVL LRGG Sbjct: 5 VKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2 Query: 224 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K Sbjct: 2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52 The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bpback to top |