CX300545

Overview
NameCX300545
Unique NameCX300545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:41..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_TRYBB (60S ribosomal protein L40 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRATNCRKKGCGHCSNLRMKKKLR 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52
The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RL40_LEITA5.165e-1461.5460S ribosomal protein L40 OS=Leishmania tarentolae... [more]
RL40_LEIMA5.165e-1461.5460S ribosomal protein L40 OS=Leishmania major GN=U... [more]
RL40_TRYBB1.503e-1361.5460S ribosomal protein L40 OS=Trypanosoma brucei br... [more]
RL40_TRYCR1.963e-1361.5460S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011E05SK SaltLeaf1 Citrus clementina cDNA clone C07011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bp
CTTCGTGAAAACCCTAACCGGAATGACCATAACTCTCGATGTCGAGAGCA
GCGACACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATT
CCCCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGG
GCGTACCTTGGCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGG
TGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCT
CGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCT
GCATCCCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATC
AGTTGAGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGAT
ATGTGCCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTC
TGAATAGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGAAG
TTGATTCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTAAAAAAAAAA
AAAAAAA
back to top