CX300545

Overview
NameCX300545
Unique NameCX300545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:41..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITLDVE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITLDVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 FVKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220
            FVKTLTG TITL+VESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_ARATH2.230e-3397.26Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO4.968e-3395.89Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_EUPEU6.489e-3395.89Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_CHLRE6.489e-3395.89Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST1.107e-3294.52Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_TETPY1.107e-3294.52Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_SCHPO1.107e-3294.52Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.107e-3294.52Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.107e-3294.52Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.107e-3294.52Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07011E05SK SaltLeaf1 Citrus clementina cDNA clone C07011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bp
CTTCGTGAAAACCCTAACCGGAATGACCATAACTCTCGATGTCGAGAGCA
GCGACACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATT
CCCCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGG
GCGTACCTTGGCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGG
TGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCT
CGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCT
GCATCCCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATC
AGTTGAGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGAT
ATGTGCCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTC
TGAATAGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGAAG
TTGATTCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTAAAAAAAAAA
AAAAAAA
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