CX300545

Overview
NameCX300545
Unique NameCX300545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:41..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RL40_SHEEP4.363e-2186.5460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT4.363e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB4.363e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG4.363e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA4.363e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]
RL40_MOUSE4.363e-2186.5460S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA4.363e-2186.5460S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN4.363e-2186.5460S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]
RL40_FELCA4.363e-2186.5460S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]
RL40_CHICK4.363e-2186.5460S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]

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Properties
Property NameValue
Genbank descriptionC07011E05SK SaltLeaf1 Citrus clementina cDNA clone C07011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bp
CTTCGTGAAAACCCTAACCGGAATGACCATAACTCTCGATGTCGAGAGCA
GCGACACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATT
CCCCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGG
GCGTACCTTGGCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGG
TGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCT
CGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCT
GCATCCCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATC
AGTTGAGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGAT
ATGTGCCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTC
TGAATAGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGAAG
TTGATTCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTAAAAAAAAAA
AAAAAAA
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