CX300545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20 Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 +IEPSL LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSN RPKKK+K Sbjct: 1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20 Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 2 Query: 221 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 376 IIEPSL LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20 Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I +D+E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 2 Query: 224 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 373 IEPSL+ LARKY DKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKK+ Sbjct: 1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I +D+E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I +D+E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 220 VKTLTG I +D+E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX300545 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19 Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 2 Query: 5 VKTLTGMTITLDVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 226 VKTLTG I +D+E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DY I+ S LHLVL LRGG++ Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 78 The following BLAST results are available for this feature:
BLAST of CX300545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300545 ID=CX300545; Name=CX300545; organism=Citrus clementina; type=EST; length=557bpback to top |