CX300549

Overview
NameCX300549
Unique NameCX300549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length263
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1083..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNF P K
Sbjct:  223 FSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCP 127
            FS FGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNF P
Sbjct:  219 FSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVP 260          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNF P K
Sbjct:  221 FSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNF P K
Sbjct:  225 FSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.422e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.422e-17
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNF P K
Sbjct:  220 FSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
The following BLAST results are available for this feature:
BLAST of CX300549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB25_NICPL3.179e-1788.64Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_MAIZE3.179e-1792.86Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB48_MAIZE4.152e-1788.64Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC4.152e-1788.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.152e-1788.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB28_PEA4.152e-1788.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH4.152e-1788.64Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH4.152e-1788.64Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB27_TOBAC5.422e-1788.64Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN5.422e-1790.91Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07011E10SK SaltLeaf1 Citrus clementina cDNA clone C07011E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300549 ID=CX300549; Name=CX300549; organism=Citrus clementina; type=EST; length=263bp
GTTCTCCACGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCC
TGGGCCTACGCCACCAACTTTTGTCCCCGGAAAGTGAGCTTCGGTTGATA
AGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAG
CTCATGGAAGCTTTAATTTGAGTTGTGATTATTTACAAAATGCTTCAAAA
AAAAAAAAAAAAA
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