CX300549

Overview
NameCX300549
Unique NameCX300549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length263
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.082e-17
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 2
Query:    5 STFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            S FGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNF P K
Sbjct:  223 SMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.249e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNF P K
Sbjct:  185 FSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNF P K
Sbjct:  224 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNF P K
Sbjct:  194 FSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNF P K
Sbjct:  107 FSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNF P K
Sbjct:  223 FSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNF P K
Sbjct:  221 FSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX300549 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    2 FSTFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFCPRK 133
            FS FGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNF P K
Sbjct:  222 FSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CX300549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB22_MAIZE7.082e-1790.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA9.249e-1788.64Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2A_SPIOL1.208e-1688.64Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC4.590e-1684.09Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY5.995e-1686.36Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH5.995e-1686.36Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI5.995e-1684.09Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI5.995e-1686.36Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU1.023e-1584.09Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_TOBAC1.336e-1584.09Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07011E10SK SaltLeaf1 Citrus clementina cDNA clone C07011E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300549 ID=CX300549; Name=CX300549; organism=Citrus clementina; type=EST; length=263bp
GTTCTCCACGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCC
TGGGCCTACGCCACCAACTTTTGTCCCCGGAAAGTGAGCTTCGGTTGATA
AGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAG
CTCATGGAAGCTTTAATTTGAGTTGTGATTATTTACAAAATGCTTCAAAA
AAAAAAAAAAAAA
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