CX300550

Overview
NameCX300550
Unique NameCX300550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+MIKPD VQR L+GE+I R+E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 432
            E+TFI IKPDGVQRG V E++ R EKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKW 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 78/147 (53.06%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 438
            E+TF+M+KPDGVQR L+GE+++R E+KG  L G KLM V    A +HY++ + KPFFG L+++ITSGPV AM+WEGE  +   R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS ESA +EI L+F  D  +  +  ++ WIY
Sbjct:    2 EKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVGKNIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWIY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.766e-41
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 432
            E+TFI IKPDGVQRG V E+I R EKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W +S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWYTSDSKW 148          
The following BLAST results are available for this feature:
BLAST of CX300550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAAC2.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAB2.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA92.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA82.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA32.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA22.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA12.883e-4155.41Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_PROMS2.883e-4155.86Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_BACLD2.883e-4153.06Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]
NDK_PROM93.766e-4156.55Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC07011E11SK SaltLeaf1 Citrus clementina cDNA clone C07011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300550 ID=CX300550; Name=CX300550; organism=Citrus clementina; type=EST; length=631bp
GAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGT
TGGTGAACTCATCATCAGACTTGAGAAGAAGGGTTTCTCTTTGAAGGGTT
TGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGAT
TTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGG
TCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCC
GCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATC
CGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGA
CTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCC
CTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAAT
GTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCC
TATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGA
AGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATT
CTTGTGGTTGCCATATACAATATTTAAGCTT
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