CX300550

Overview
NameCX300550
Unique NameCX300550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_BARBK (Nucleoside diphosphate kinase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.101e-24
Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 405
            E+TF MIKPD  +R L G +   LE  G  +   K + + R  AE  Y     +PFF  L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSDS E+A+ EIA WF D  I
Sbjct:    4 ERTFSMIKPDATRRNLTGAITKMLEDTGLRVIASKRVWMSRREAEGFYAVHRERPFFEELVEFMSSGPTVVQVLEGENAIMKNREVMGATNPADAEMGTIRKVHALSIGENSVHGSDSPETAKTEIAYWFSDTEI 138          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANOR (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANOM (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANCP (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANCB (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANC8 (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANC5 (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_XANAC (Nucleoside diphosphate kinase OS=Xanthomonas axonopodis pv. citri GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_VEREI (Nucleoside diphosphate kinase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 393
            E+T  +IKPD V + ++G++  R E  G  +   +++ + RP AE+ Y     +PFF  L+E++ SGPV+  + EGE  V   R ++GAT+P ++  GTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:    4 ERTLSIIKPDAVAKNVIGQIYARFEAAGLKIVAARMVHLARPEAERFYAVHKERPFFKDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKAQTGTIRADFADSIDANAVHGSDAAETAQAEVAFFFP 134          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_STRMK (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain K279a) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 390
            E+T  +IKPD V + ++GE+  R EK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP ++APGTIR D A     N  HGSDSVE+A  EIA +F
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFAESIDANAAHGSDSVENAAIEIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CX300550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BARBK1.101e-2443.70Nucleoside diphosphate kinase OS=Bartonella bacill... [more]
NDK_XANOR1.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANOM1.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANCP1.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANCB1.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANC81.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANC51.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANAC1.438e-2443.85Nucleoside diphosphate kinase OS=Xanthomonas axono... [more]
NDK_VEREI1.438e-2439.69Nucleoside diphosphate kinase OS=Verminephrobacter... [more]
NDK_STRMK1.438e-2444.62Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011E11SK SaltLeaf1 Citrus clementina cDNA clone C07011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300550 ID=CX300550; Name=CX300550; organism=Citrus clementina; type=EST; length=631bp
GAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGT
TGGTGAACTCATCATCAGACTTGAGAAGAAGGGTTTCTCTTTGAAGGGTT
TGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGAT
TTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGG
TCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCC
GCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATC
CGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGA
CTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCC
CTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAAT
GTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCC
TATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGA
AGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATT
CTTGTGGTTGCCATATACAATATTTAAGCTT
back to top