CX300550

Overview
NameCX300550
Unique NameCX300550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.745e-46
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TFI IKPDGVQRGL+G++I R E+KGF L  +K +   +    +HY DL  +PF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.279e-46
Identity = 86/148 (58.11%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TF+ IKPDGVQRGLVG +I R E+KG++L GLKLM V R  AE+HY +   KPFF  L+ +ITSGPVVAM+WEG GV+   R +IGATNP  + PGT+RGD A+  GRN+IHGSDS E+A++EI LWF     + W+ +L  W+YE
Sbjct:    2 ERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.888e-46
Identity = 89/148 (60.14%), Postives = 111/148 (75.00%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVGE++ R E++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:    2 ERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.888e-46
Identity = 89/148 (60.14%), Postives = 111/148 (75.00%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 441
            E+TFI +KPDGVQR +VGE+I R E+KGF L  +K +   +   EKHY +LS KPF+  LI+Y++SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF  +  + +Q+    WIYE
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.078e-46
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+M+KPDGVQRGLVG++I R E KGF L GLKL++V R  AE+HY     +PFFGSL+E+I S PVVAM+WEG+G +   R IIGATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:    2 ERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.078e-46
Identity = 86/148 (58.11%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVG +I RLE +G+ L GLKL+ V +  AE HY +   +PFF SL+++ITSGPVVAM+W+G+GV+   R +IG TNP ++ PGTIRGD  I  GRN+IHGSD VE+AQ+EIALWF +   ++W      WIYE
Sbjct:    2 ERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEAEPGTIRGDFGIDIGRNLIHGSDGVETAQREIALWFDESELVSWTPVAQSWIYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.632e-46
Identity = 89/148 (60.14%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVGE+I R E+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI LWF P+  I ++     WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.661e-46
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 438
            E+TF+MIKPDGV RGL+GE++ R+E KG  + G KLMTV    A+ HY + S KPFFG L+E+ITSGPV AM+ EG+ VV+ GRT++G TNPA+SAPGTIRGD  +  G+NIIHGSDSV SA KEIALWF +  I ++      W+Y
Sbjct:    2 EKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESAPGTIRGDFGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWVY 148          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.131e-45
Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TFIM+KPDGVQRGLVGE+I R EK+GF L GLKLM + R  AE HY +   KPFF  L+ +ITSGPVVAM+WEG+ V+ T R ++GATNP ++ PGTIRG   I  GRN+IHGSDS ESA +EIAL+F +   ++++ +L  WIYE
Sbjct:    2 ERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKAQPGTIRGTYGIDVGRNVIHGSDSPESAAREIALFFKEEELLSYEKTLDTWIYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.131e-45
Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVG+++ R E+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
The following BLAST results are available for this feature:
BLAST of CX300550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA2_XENLA1.745e-4658.78Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_THEEB2.279e-4658.11Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_GLOVI3.888e-4660.14Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_GINCI3.888e-4660.14Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_SYNP25.078e-4657.43Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNJB5.078e-4658.11Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKB_BOVIN6.632e-4660.14Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK_MACCJ8.661e-4659.18Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDK_CARHZ1.131e-4559.46Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDKB_CANFA1.131e-4558.11Nucleoside diphosphate kinase B OS=Canis familiari... [more]

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Properties
Property NameValue
Genbank descriptionC07011E11SK SaltLeaf1 Citrus clementina cDNA clone C07011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300550 ID=CX300550; Name=CX300550; organism=Citrus clementina; type=EST; length=631bp
GAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGT
TGGTGAACTCATCATCAGACTTGAGAAGAAGGGTTTCTCTTTGAAGGGTT
TGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGAT
TTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGG
TCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCC
GCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATC
CGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGA
CTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCC
CTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAAT
GTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCC
TATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGA
AGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATT
CTTGTGGTTGCCATATACAATATTTAAGCTT
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