CX300550

Overview
NameCX300550
Unique NameCX300550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TF+M+KPDGVQRGLVGE+I RLE+KG  +  +K++ + R  AE HY +   KPFF +L++YITSGPVVAM+ EG+  +K  RT++GATNPA++APGTIRGD  +  GRN++H SDS +SA++EI+L+F D  I NW+ +   WIYE
Sbjct:    2 ERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 87/148 (58.78%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TFI IKPDGVQRGL+G++I R E+KGF L  +K     +    +HY DL  +PF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.930e-45
Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVG +I RLE +G+ L GLKL+ V +  AE HY +   +PFF  L+++ITSGPVVAM+W+G+GV+   R +IG TNP  + PGTIRGD  I  GRN++HGSD  E+AQ+EIALWF +   +NW  +   WIYE
Sbjct:    2 ERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.291e-45
Identity = 86/148 (58.11%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVG +I R E+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:    2 ERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.291e-45
Identity = 86/148 (58.11%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVG +I R E+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:    2 ERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.614e-45
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 441
            ++TF+M+KPDGVQRGLVGE+I R E++GF L  LKL+ +DR  AE+HYE+   KPFF  L+ YITSGPV AM+ EG  VV T R ++GAT PA++ PGTIRG   I  GRNI+HGSDS  SA +EI L+F DG  I ++ +L PWIYE
Sbjct:    2 DRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKALPGTIRGTYGIDVGRNIVHGSDSAASAAREIGLFFADGELIEYERALDPWIYE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.332e-45
Identity = 79/147 (53.74%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 438
            E+TFIM+KPDGVQR L+GE++ R EKKGF L G KLM V R  AE+HY +   +PFFG L+++ITSGPV AM+WEGE V+   R ++G TNP ++APGTIRGD  +  G+N+IHGSDS +SA++EI+L+F +   +++   ++ W+Y
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWLY 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 7.332e-45
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+TF+ +KPDGVQR LVGE++ R E+KGF L  LKL+        +HY +L  +PF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.576e-45
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 441
            E+T++MIKPDGVQRGLVGE+I R EKKGF L G+K + + R  AEKHY +   KPFF  L++YI SGPVVAM WEG+ +V   R ++GATNPA++APGTIRG  A+  GRNIIHGSDS  SA++E+A++F  D  + W  +L  W+ E
Sbjct:    2 ERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIGRNIIHGSDSPASAERELAIYFQSDELVEWDRTLQGWLTE 149          
BLAST of CX300550 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.251e-44
Identity = 86/148 (58.11%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 EQTFIMIKPDGVQRGLVGELIIRLEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 441
            E+TFI IKPDGVQRGLVGE++ R E+KGF L GLK +T  R  AE+HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD+ E+AQ EI LWF    +N W  S   W  E
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAAETAQFEIGLWFQASELNDWSPSDQGWRVE 150          
The following BLAST results are available for this feature:
BLAST of CX300550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ARCFU1.477e-4556.08Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDKA1_XENLA1.477e-4558.78Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_SYNJA1.930e-4556.76Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNP63.291e-4558.11Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE73.291e-4558.11Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_DESAP5.614e-4558.78Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK_GEOKA7.332e-4553.74Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK3_HUMAN7.332e-4556.08Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_HELMI9.576e-4557.43Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_SYNSC1.251e-4458.11Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07011E11SK SaltLeaf1 Citrus clementina cDNA clone C07011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300550 ID=CX300550; Name=CX300550; organism=Citrus clementina; type=EST; length=631bp
GAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGT
TGGTGAACTCATCATCAGACTTGAGAAGAAGGGTTTCTCTTTGAAGGGTT
TGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGAT
TTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGG
TCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCC
GCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATC
CGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGA
CTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCC
CTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAAT
GTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCC
TATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGA
AGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATT
CTTGTGGTTGCCATATACAATATTTAAGCTT
back to top